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          • Home
          • › Search Tool
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          • › Rn01464245_m1
          See other HDAC5 GE Assays ›
          Gene Symbol:
          Hdac5
          Gene Name:
          histone deacetylase 5
          Gene Aliases:
          -
          Chromosome Location:
          Chr.10: 90140183 - 90169853 on Build Rnor_6.0
          Species:
          Rat
          Species Specific ID (Flybase ID):
          -
          Assay ID Rn01464245_m1
          Best Coverage
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          Availability Inventoried
          Catalog # 4331182
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          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Hdac5
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_053450.1 NP_445902.1 2905 64
          GenBank mRNA BC086431.1 - 3 - 4 226 64

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          More Information


          Updated Mapping Information

          This assay targets the same location as RTA transcript cluster(s) TC1000003859.rn.1

          Set Membership:

          Amplicon length less than or equal to 70 Mammalian Gene Collection Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

          Panther Classification:

          Molecular Function -

          histone modifying enzyme

          Gene Ontology Categories:

          Function(s) Process(es)

          negative regulation of transcription from RNA polymerase II promoter
          osteoblast development
          chromatin organization
          transcription from RNA polymerase II promoter
          protein deacetylation
          heart development
          regulation of myotube differentiation
          negative regulation of myotube differentiation
          response to activity
          histone deacetylation
          neuron differentiation
          multicellular organismal response to stress
          regulation of gene expression, epigenetic
          response to cocaine
          response to drug
          regulation of protein binding
          negative regulation of osteoblast differentiation
          negative regulation of transcription, DNA-templated
          positive regulation of transcription from RNA polymerase II promoter
          regulation of skeletal muscle fiber development
          positive regulation of sequence-specific DNA binding transcription factor activity
          regulation of striated muscle cell differentiation
          renal tubule morphogenesis
          cellular response to lipopolysaccharide
          cellular response to fluid shear stress
          negative regulation of cell migration involved in sprouting angiogenesis
          positive regulation of neural precursor cell proliferation
          regulation of histone H3-K9 acetylation
          positive regulation of stem cell proliferation
          RNA polymerase III transcription factor binding
          core promoter sequence-specific DNA binding
          core promoter binding
          transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
          RNA polymerase II transcription factor binding
          chromatin binding
          transcription corepressor activity
          histone deacetylase activity
          protein kinase C binding
          protein binding
          transcription factor binding
          protein kinase binding
          protein deacetylase activity
          histone deacetylase binding
          transcription regulatory region DNA binding
          metal ion binding
          repressing transcription factor binding

          MicroArray Probes:

          Affymetrix ABI

          Array Name Probe IDs Targets Target Type
          Affymetrix Rat Clariom S Assay PSR1000034726.rn.1 TC1000003859.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR1000034727.rn.1 TC1000003859.rn.1 RTA TC
          Array Name Probe IDs Targets Target Type
          ABI Rat Genome Survey Microarray 21276517 - -

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