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          • Home
          • › Search Tool
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          • › Rn01492424_m1
          See other SOX5 GE Assays ›
          Gene Symbol:
          Sox5
          Gene Name:
          SRY (sex determining region Y)-box 5
          Gene Aliases:
          Sox5l1
          Chromosome Location:
          Chr.4: 178062267 - 178441669 on Build Rnor_6.0
          Species:
          Rat
          Species Specific ID (Flybase ID):
          -
          Assay ID Rn01492424_m1
          Best Coverage
          Size
          Availability Inventoried
          Catalog # 4331182
          Price 284.00
          Your Price
          Online offer: 266.65
          266.65
          Check your price ›
          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Sox5
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_001271267.1 NP_001258196.1 14 - 15 2064 137
          XM_006237604.2 XP_006237666.1 14 - 15 2113 137
          XM_008763349.1 XP_008761571.1 14 - 15 2084 137
          XM_008763350.1 XP_008761572.1 7 - 8 995 137
          GenBank mRNA BC086415.1 - 7 - 8 998 7131922 137

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          More Information


          Updated Mapping Information

          This assay targets the same location as RTA transcript cluster(s) TC0400004049.rn.1

          Set Membership:

          Amplicon length greater than or equal to 101 3' Most Mammalian Gene Collection Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

          Gene Ontology Categories:

          Function(s) Process(es)

          in utero embryonic development
          transcription from RNA polymerase II promoter
          central nervous system neuron differentiation
          positive regulation of chondrocyte differentiation
          cell fate commitment
          negative regulation of transcription, DNA-templated
          positive regulation of transcription from RNA polymerase II promoter
          oligodendrocyte differentiation
          cartilage development
          regulation of timing of neuron differentiation
          positive regulation of cartilage development
          cellular response to transforming growth factor beta stimulus
          positive regulation of mesenchymal stem cell differentiation
          RNA polymerase II transcription factor activity, sequence-specific DNA binding
          DNA binding
          transcription factor activity, sequence-specific DNA binding
          transcription regulatory region DNA binding
          protein heterodimerization activity

          MicroArray Probes:

          Agilent Affymetrix ABI Illumina

          Array Name Probe IDs Targets Target Type
          Agilent Whole Rat Genome Microarray 4x44K v2 A_64_P015677 - -
          Agilent Whole Rat Genome Microarray 4x44K v2 A_64_P024321 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P024321 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P024321 - -
          Agilent SurePrint G3 Rat GE 8x60K Microarray A_64_P024321 - -
          SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P149847 - -
          SurePrint G3 Rat Gene Expression Microarray G4131A A_43_P16048 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 93459 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 92897 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 90046 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 78270 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 93594 - -
          Array Name Probe IDs Targets Target Type
          Affymetrix Rat Gene 1.0 ST Array 10866745 - -
          Affymetrix Rat Gene 1.0 ST Array 10866749 - -
          Affymetrix Rat Gene 1.0 ST Array 10866741 - -
          Affymetrix Rat Gene 1.0 ST Array 10866753 - -
          Affymetrix Rat Gene 1.0 ST Array 10866739 - -
          Affymetrix Rat Gene 1.0 ST Array 10866743 - -
          Affymetrix Rat Gene 1.0 ST Array 10866742 - -
          Affymetrix Rat Gene 1.0 ST Array 10866744 - -
          Affymetrix Rat Gene 1.0 ST Array 10866752 - -
          Affymetrix Rat Gene 1.0 ST Array 10866751 - -
          Affymetrix Rat Gene 1.0 ST Array 10866755 - -
          Affymetrix Rat Gene 1.0 ST Array 10866754 - -
          Affymetrix Rat Gene 1.0 ST Array 10866740 - -
          Affymetrix Rat Gene 1.1 ST Array 10866738 - -
          Affymetrix Rat Clariom S Assay PSR0400028795.rn.1 TC0400004049.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0400028797.rn.1 TC0400004049.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0400028793.rn.1 TC0400004049.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0400028798.rn.1 TC0400004049.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0400028794.rn.1 TC0400004049.rn.1 RTA TC
          Affymetrix Rat Gene 1.0 ST Array 10866738 - -
          Array Name Probe IDs Targets Target Type
          ABI Rat Genome Survey Microarray 22018991 - -
          ABI Rat Genome Survey Microarray 22377163 - -
          ABI Rat Genome Survey Microarray 22398087 - -
          Array Name Probe IDs Targets Target Type
          Illumina ratRef-12 v1.0 expression beadchip ILMN_1352600 - -
          RatRef-12 Expression BeadChip ILMN_62942 - -

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