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- Gene Symbol:
-
Ptch1 - Gene Name:
- patched 1
- Gene Aliases:
- Ptch, Ptch2
- Chromosome Location:
- Chr.17: 1032242 - 1085885 on Build Rnor_6.0
- Species:
- Rat
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Ptch1 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_053566.1 | NP_446018.1 | 22 - 23 | 3765 | 70 | |
| GenBank mRNA | AY357891.1 | - | 22 - 23 | 3765 | 70 | |
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC1700001174.rn.1Set Membership: |
Ambion siRNA available
Amplicon length less than or equal to 70
3' Most
Recommended Assay
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Matching Ambion siRNAs:
Gene Ontology Categories:
Function(s)
Process(es)
negative regulation of transcription from RNA polymerase II promoter
branching involved in ureteric bud morphogenesis
in utero embryonic development
cell fate determination
neural tube formation
neural tube closure
heart morphogenesis
signal transduction
smoothened signaling pathway
regulation of mitotic cell cycle
pattern specification process
brain development
negative regulation of cell proliferation
epidermis development
regulation of smoothened signaling pathway
response to mechanical stimulus
organ morphogenesis
dorsal/ventral pattern formation
epidermal cell fate specification
response to chlorate
positive regulation of cholesterol efflux
response to organic cyclic compound
protein processing
spinal cord motor neuron differentiation
neural tube patterning
dorsal/ventral neural tube patterning
neural plate axis specification
embryonic limb morphogenesis
mammary gland development
response to estradiol
response to retinoic acid
regulation of protein localization
limb morphogenesis
hindlimb morphogenesis
regulation of growth
negative regulation of multicellular organism growth
regulation of cell proliferation
response to drug
glucose homeostasis
negative regulation of sequence-specific DNA binding transcription factor activity
keratinocyte proliferation
positive regulation of epidermal cell differentiation
negative regulation of osteoblast differentiation
negative regulation of smoothened signaling pathway
embryonic organ development
negative regulation of epithelial cell proliferation
negative regulation of cell division
pharyngeal system development
mammary gland duct morphogenesis
mammary gland epithelial cell differentiation
smoothened signaling pathway involved in dorsal/ventral neural tube patterning
cell differentiation involved in kidney development
somite development
cellular response to cholesterol
renal system development
cell proliferation involved in metanephros development
protein targeting to plasma membrane
molecular_function
patched binding
smoothened binding
hedgehog receptor activity
heparin binding
cholesterol binding
cyclin binding
protein complex binding
hedgehog family protein binding
negative regulation of transcription from RNA polymerase II promoter
branching involved in ureteric bud morphogenesis
in utero embryonic development
cell fate determination
neural tube formation
neural tube closure
heart morphogenesis
signal transduction
smoothened signaling pathway
regulation of mitotic cell cycle
pattern specification process
brain development
negative regulation of cell proliferation
epidermis development
regulation of smoothened signaling pathway
response to mechanical stimulus
organ morphogenesis
dorsal/ventral pattern formation
epidermal cell fate specification
response to chlorate
positive regulation of cholesterol efflux
response to organic cyclic compound
protein processing
spinal cord motor neuron differentiation
neural tube patterning
dorsal/ventral neural tube patterning
neural plate axis specification
embryonic limb morphogenesis
mammary gland development
response to estradiol
response to retinoic acid
regulation of protein localization
limb morphogenesis
hindlimb morphogenesis
regulation of growth
negative regulation of multicellular organism growth
regulation of cell proliferation
response to drug
glucose homeostasis
negative regulation of sequence-specific DNA binding transcription factor activity
keratinocyte proliferation
positive regulation of epidermal cell differentiation
negative regulation of osteoblast differentiation
negative regulation of smoothened signaling pathway
embryonic organ development
negative regulation of epithelial cell proliferation
negative regulation of cell division
pharyngeal system development
mammary gland duct morphogenesis
mammary gland epithelial cell differentiation
smoothened signaling pathway involved in dorsal/ventral neural tube patterning
cell differentiation involved in kidney development
somite development
cellular response to cholesterol
renal system development
cell proliferation involved in metanephros development
protein targeting to plasma membrane
molecular_function
patched binding
smoothened binding
hedgehog receptor activity
heparin binding
cholesterol binding
cyclin binding
protein complex binding
hedgehog family protein binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P147263 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 2002 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 245810 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 525435 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 490784 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 58960 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 796597 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 350663 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 213994 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 115103 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 666907 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 13679 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 308231 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 438490 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 496703 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 147487 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 460511 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 854508 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 174156 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 544329 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 449656 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 922151 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 718742 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 49674 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 607607 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 134272 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 382418 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 693333 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 415061 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 813438 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 77729 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 759101 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 793620 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 444418 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 454986 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 943314 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 379002 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 55862 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 213561 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 157143 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 5628 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 43289 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 162320 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 36201 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 86127 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P147263 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P147263 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P147263 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_43_P19684 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_43_P15776 | - | - |
| Matsumoto (Agilent Rat cDNA Microarray G4105A) | 701750422 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 15875 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 25917 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 16874 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 19182 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 19174 | - | - |
| Agilent Rat cDNA Microarray (G4105A) | 701750422 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10793534 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10793544 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10793551 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10793530 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10793552 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10793538 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10793542 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10793531 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10793543 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10793533 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10793547 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10793535 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10793541 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10793548 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10793540 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10793537 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10793536 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10793545 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10793539 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10793546 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10793549 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10793550 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10793532 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10793528 | - | - |
| Rat Genome 230 2.0 Array | 1398614_at | - | - |
| Rat Genome 230 2.0 Array | 1398614_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1398614_at | - | - |
| Affymetrix HT Rat Focus Array | 1398614_PM_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR1700008063.rn.1 | TC1700001174.rn.1 | RTA TC |
| Rat Expression Set 230 | 1398614_PM_at | - | - |
| Rat Expression Set 230 | 1398614_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10793528 | - | - |
| Rat Genome U34 Set | AF079162_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 21579117 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1371138 | - | - |
| RatRef-12 Expression BeadChip | ILMN_60929 | - | - |
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