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- Gene Symbol:
-
Smad6 - Gene Name:
- SMAD family member 6
- Gene Aliases:
- -
- Chromosome Location:
- Chr.8: 68897746 - 68967219 on Build Rnor_6.0
- Species:
- Rat
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Smad6 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_001109002.2 | NP_001102472.1 | 2 - 3 | 877 | 134 | |
| XM_006243241.2 | XP_006243303.1 | 2 - 3 | 1988 | 134 | ||
| XM_006243242.2 | XP_006243304.1 | 3 - 4 | 1905 | 134 | ||
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC0800002742.rn.1Set Membership: |
Amplicon length greater than or equal to 101
Recommended Assay
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Panther Classification:
Gene Ontology Categories:
Function(s)
Process(es)
ureteric bud development
transcription, DNA-templated
immune response
transforming growth factor beta receptor signaling pathway
zygotic specification of dorsal/ventral axis
negative regulation of cell proliferation
negative regulation of SMAD protein complex assembly
BMP signaling pathway
negative regulation of transforming growth factor beta receptor signaling pathway
negative regulation of BMP signaling pathway
cell-substrate adhesion
response to laminar fluid shear stress
intracellular signal transduction
negative regulation of apoptotic process
response to estrogen
fat cell differentiation
negative regulation of pathway-restricted SMAD protein phosphorylation
RNA polymerase II core promoter proximal region sequence-specific DNA binding
molecular_function
chromatin binding
transcription factor activity, sequence-specific DNA binding
transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity
ubiquitin protein ligase binding
type I transforming growth factor beta receptor binding
identical protein binding
transcription regulatory region DNA binding
co-SMAD binding
I-SMAD binding
R-SMAD binding
type I activin receptor binding
ureteric bud development
transcription, DNA-templated
immune response
transforming growth factor beta receptor signaling pathway
zygotic specification of dorsal/ventral axis
negative regulation of cell proliferation
negative regulation of SMAD protein complex assembly
BMP signaling pathway
negative regulation of transforming growth factor beta receptor signaling pathway
negative regulation of BMP signaling pathway
cell-substrate adhesion
response to laminar fluid shear stress
intracellular signal transduction
negative regulation of apoptotic process
response to estrogen
fat cell differentiation
negative regulation of pathway-restricted SMAD protein phosphorylation
RNA polymerase II core promoter proximal region sequence-specific DNA binding
molecular_function
chromatin binding
transcription factor activity, sequence-specific DNA binding
transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity
ubiquitin protein ligase binding
type I transforming growth factor beta receptor binding
identical protein binding
transcription regulatory region DNA binding
co-SMAD binding
I-SMAD binding
R-SMAD binding
type I activin receptor binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P068152 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 773448 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 494170 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 672976 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 777317 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 596899 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 532408 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 636879 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 271151 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 708307 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 24282 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 508456 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 383617 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 615691 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 753361 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 966055 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 963178 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 224476 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 891790 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 862186 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 558574 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 952946 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 178267 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 486887 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 961059 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 428075 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 330158 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 578985 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 867485 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 894584 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 162120 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 100734 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 266358 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 506843 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 310258 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 818404 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 156872 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 677137 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 653724 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 955569 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 145533 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 450717 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 585171 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 967720 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 223938 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 30820 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 473723 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 740990 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 140514 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 621219 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 109082 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 337616 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 438081 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 835608 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 96739 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 115439 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 64574 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 115461 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 50561 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 50988 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 138306 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 174339 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 45151 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P068152 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P068152 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P068152 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P183134 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 68861 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 37085 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10918187 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10918188 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10918190 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10918189 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10918186 | - | - |
| Rat Genome 230 2.0 Array | 1377467_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1385928_at | - | - |
| Rat Genome 230 2.0 Array | 1394025_at | - | - |
| Rat Genome 230 2.0 Array | 1375121_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1394025_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1377467_at | - | - |
| Rat Genome 230 2.0 Array | 1385928_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1375121_at | - | - |
| Affymetrix HT Rat Focus Array | 1375121_at | - | - |
| Affymetrix HT Rat Focus Array | 1385928_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1377467_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1394025_at | - | - |
| Affymetrix HT Rat Focus Array | 1385928_at | - | - |
| Affymetrix HT Rat Focus Array | 1377467_at | - | - |
| Affymetrix HT Rat Focus Array | 1394025_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1375121_PM_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR0800022284.rn.1 | TC0800002742.rn.1 | RTA TC |
| Rat Expression Set 230 | 1375121_at | - | - |
| Rat Expression Set 230 | 1375121_PM_at | - | - |
| Rat Expression Set 230 | 1377467_at | - | - |
| Rat Expression Set 230 | 1377467_PM_at | - | - |
| Rat Expression Set 230 | 1394025_at | - | - |
| Rat Expression Set 230 | 1385928_PM_at | - | - |
| Rat Expression Set 230 | 1394025_PM_at | - | - |
| Rat Expression Set 230 | 1385928_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10918186 | - | - |
| Rat Genome U34 Set | rc_AA997044_at | - | - |
| Rat Genome U34 Set | rc_AA963778_at | - | - |
| Rat Genome U34 Set | rc_AI136466_at | - | - |
| Rat Genome U34 Set | rc_AI175564_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 21950859 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1367741 | - | - |
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