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SNP ID:
rs77216756
Gene
FAT2 SLC36A1
Gene Name
Set Membership:
-
Chromosome Location:
Chr.5: 151504354 - 151504354 on Build GRCh38
Polymorphism:
G/T, Transversion Substitution
Context Sequence [VIC/FAM]:

GACTGGGTGGGAGGGAGTGGTGAGG[G/T]CACCAAAGGCCACAGAGGCTTCTGG

Assay ID C_104360166_10
Size
Availability Made To Order
Catalog # 4351379
Price
Your Price
Online offer:
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Assay Details



Species:

 Human

dbSNP Submissions:

 NA

Phenotype:

 MIM: 604269 MIM: 606561

Literature Links:

 FAT2 PubMed Links

Allele Nomenclature:

Minor Allele Frequency:
1000Genome Applied Biosystems® HapMap
Global
G (0.04)
(0.96)
Caucasian - Not Available CEPH (CEU) - Not Available
EAS
G (0.00)
(1.00)
African American - Not Available YRI (Yoruba) - Not Available
SAS
G (0.00)
(1.00)
Chinese - Not Available CHB (Han Chinese) - Not Available
AFR
G (0.15)
(0.85)
Japanese - Not Available JPT (Japanese) - Not Available
EUR
G (0.00)
(1.00)
AMR
G (0.01)
(0.99)
FAT2 - FAT atypical cadherin 2
Transcript Accession SNP Location SNP Type Observed Codons Observed Amino Acid Protein ID
NM_001447.2 14615 UTR 3 NP_001438.1
XM_006714761.3 14615 UTR 3 XP_006714824.1
XM_011537600.2 14615 UTR 3 XP_011535902.1
XM_011537603.2 14615 UTR 3 XP_011535905.1
XM_017009224.1 14615 UTR 3 XP_016864713.1
XM_017009225.1 14615 UTR 3 XP_016864714.1
XM_017009226.1 14615 Intron XP_016864715.1
XM_017009227.1 14615 Intron XP_016864716.1
SLC36A1 - solute carrier family 36 member 1
Transcript Accession SNP Location SNP Type Observed Codons Observed Amino Acid Protein ID
NM_001308150.1 14615 Intron NP_001295079.1
NM_001308151.1 14615 Intron NP_001295080.1
NM_078483.3 14615 Intron NP_510968.2
XM_005268386.1 14615 Intron XP_005268443.1
XM_006714759.3 14615 Intron XP_006714822.1
XM_011537580.2 14615 Intron XP_011535882.1
XM_011537581.1 14615 Intron XP_011535883.1
XM_011537583.2 14615 Intron XP_011535885.1
XM_011537584.2 14615 Intron XP_011535886.1
XM_011537585.1 14615 Intron XP_011535887.1
XM_011537586.2 14615 Intron XP_011535888.1
XM_011537587.2 14615 Intron XP_011535889.1
XM_011537588.2 14615 Intron XP_011535890.1
XM_011537589.2 14615 Intron XP_011535891.1
XM_011537590.1 14615 Intron XP_011535892.1
XM_011537591.1 14615 Intron XP_011535893.1
XM_011537592.2 14615 Intron XP_011535894.1
XM_011537593.2 14615 Intron XP_011535895.1
XM_011537594.1 14615 Intron XP_011535896.1
XM_011537595.2 14615 Intron XP_011535897.2
XM_011537596.2 14615 Intron XP_011535898.2
XM_017009216.1 14615 Intron XP_016864705.1
XM_017009217.1 14615 Intron XP_016864706.1
XM_017009218.1 14615 Intron XP_016864707.1
XM_017009219.1 14615 Intron XP_016864708.1
XM_017009220.1 14615 Intron XP_016864709.1

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More Information


Additional Information:

For this assay, SNP(s) [rs141393219] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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