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See other CYP2C9 GT Assays ›
SNP ID:
rs7900194
Gene
CYP2C9
Gene Name
Set Membership:
> DME > Validated > Inventoried
Chromosome Location:
Chr.10: 94942309 - 94942309 on Build GRCh38
Polymorphism:
T/G, Transversion substitution
Context Sequence [VIC/FAM]:

GAGGACCGTGTTCAAGAGGAAGCCC[T/G]CTGCCTTGTGGAGGAGTTGAGAAAA

Assay ID C_25625804D_20
Size 150 rxns
Availability Inventoried
Catalog # 4362691
Price
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Assay Details



Species:

 Human

dbSNP Submissions:

 NA

Phenotype:

 MIM: 601130

Literature Links:

 CYP2C9 PubMed Links

Allele Nomenclature:

 CYP2C9*27,c.449G>T CYP2C9*27,g.3627G>T CYP2C9*8,c.449G>A CYP2C9*8,g.3627G>A

Minor Allele Frequency:
1000Genome Applied Biosystems® HapMap
Global
A (0.01)
(0.99)
Caucasian
T (0.00)
(1.00)
CEPH (CEU) - Not Available
EAS
A (0.00)
(1.00)
Caucasian
A (0.00)
(1.00)
YRI (Yoruba) - Not Available
SAS
A (0.00)
(1.00)
African American
T (0.00)
(1.00)
CHB (Han Chinese) - Not Available
AFR
A (0.05)
(0.95)
African American
A (0.04)
(0.96)
JPT (Japanese) - Not Available
EUR
A (0.00)
(1.00)
Japanese
T (0.00)
(1.00)
AMR
A (0.00)
(1.00)
Japanese
A (0.00)
(1.00)
Chinese
T (0.00)
(1.00)
Chinese
A (0.00)
(1.00)
CYP2C9 - cytochrome P450 family 2 subfamily C member 9
Transcript Accession SNP Location SNP Type Observed Codons Observed Amino Acid Protein ID
NM_000771.3 474 Missense Mutation CAC,CGC H,R 150 NP_000762.2
XM_017015758.1 474 Missense Mutation CAC,CGC H,R 150 XP_016871247.1

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More Information


Important Information

Assay C_25625804D_20 reports the major (G) and one minor (T) allele (CYP2C9*27, g.3627G>T) of a triallelic SNP. Assay C__25625804_10 reports the major (G) and other minor (A) allele (CYP2C9*8, g.3627G>A). The minor alleles are rare, thus there is a low risk that sample genotypes could be miscalled in an assay due to the presence of the unreported minor allele. To accurately determine sample genotypes, run both assays separately on the same samples and analyze data as described in the PGx Experiments User Guide (Pub. # MAN0009612) Chapter 5 section 'TaqMan DME genotyping assays to triallelic SNPs and adjacent SNP targets'.
Assay C__25625804_10 reports the major (G) and other minor (A) allele (CYP2C9*8, g.3627G>A).

Set Membership:

 DME Validated Inventoried

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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