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          • Home
          • › Search Tool
          • › Search Results
          • › C__11740467_10
          See other IL13 GT Assays ›
          SNP ID:
          rs1881457
          Gene
          IL13 TH2LCRR
          Gene Name
          interleukin 13
          T helper type 2 locus control region associated RNA
          Set Membership:
          > HapMap
          Chromosome Location:
          Chr.5: 132656717 - 132656717 on Build GRCh38
          Polymorphism:
          A/C, Transversion substitution
          Context Sequence [VIC/FAM]:

          TACAGATTAGGAAACAGGCCCGTAG[A/C]GGGGTCACACGGCCAAGTAGCGGCA

          Assay ID C__11740467_10
          Size
          Availability Made To Order
          Catalog # 4351379
          Price
          Your Price
          Online offer:
          Check your price ›
          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details



          Species:

          Human

          dbSNP Submissions:

          NA

          Phenotype:

          MIM: 147683

          Literature Links:

          IL13 PubMed Links

          Allele Nomenclature:

          Minor Allele Frequency:

          1000Genome Applied Biosystems® HapMap
          Global
          C (0.20)
          (0.80)
          Caucasian - Not Available CEPH (CEU)
          C (0.19)
          (0.81)
          EAS
          C (0.24)
          (0.76)
          African American - Not Available YRI (Yoruba)
          C (0.20)
          (0.80)
          SAS
          C (0.21)
          (0.79)
          Chinese - Not Available JPT (Japanese)
          C (0.27)
          (0.73)
          AFR
          C (0.20)
          (0.80)
          Japanese - Not Available CHB (Han Chinese)
          C (0.31)
          (0.69)
          EUR
          C (0.18)
          (0.82)
          AMR
          C (0.20)
          (0.80)
          IL13 - interleukin 13
          Transcript Accession SNP Location SNP Type Observed Codons Observed Amino Acid Protein ID
          NM_002188.2 Intron NP_002179.2
          TH2LCRR - T helper type 2 locus control region associated RNA
          There are no transcripts associated with this gene.

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          More Information


          Additional Information:

          For this assay, SNP(s) [rs2069738] are located under a probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

          Set Membership:

          HapMap

          Gene Ontology Categories:

          Function(s) Process(es)

          microglial cell activation
          positive regulation of immunoglobulin production
          movement of cell or subcellular component
          inflammatory response
          immune response
          signal transduction
          cell-cell signaling
          regulation of proton transport
          positive regulation of B cell proliferation
          response to lipopolysaccharide
          positive regulation of connective tissue growth factor production
          negative regulation of NAD(P)H oxidase activity
          response to nicotine
          positive regulation of tyrosine phosphorylation of Stat6 protein
          positive regulation of macrophage activation
          positive regulation of mast cell degranulation
          response to ethanol
          positive regulation of smooth muscle cell proliferation
          positive regulation of protein secretion
          positive regulation of release of sequestered calcium ion into cytosol
          cellular response to mechanical stimulus
          cellular response to cytokine stimulus
          negative regulation of transforming growth factor beta production
          negative regulation of neuron death
          negative regulation of lung ciliated cell differentiation
          positive regulation of lung goblet cell differentiation
          negative regulation of complement-dependent cytotoxicity
          positive regulation of pancreatic stellate cell proliferation
          negative regulation of endothelial cell apoptotic process
          cytokine activity
          interleukin-13 receptor binding
          protein binding

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