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SNP ID:
rs62193468
Gene
ATG4B THAP4
Gene Name
Set Membership:
-
Chromosome Location:
Chr.2: 241638501 - 241638501 on Build GRCh38
Polymorphism:
C/T, Transition substitution
Context Sequence [VIC/FAM]:

CTAGCCCAGTAGCCCTAGAAATATT[C/T]TTACACAGAAGTTTTAGCTCATTCA

Assay ID C__99616630_10
Size
Availability Made To Order
Catalog # 4351379
Price
Your Price
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Assay Details



Species:

 Human

dbSNP Submissions:

 NA

Phenotype:

 MIM: 611338 MIM: 612533

Literature Links:

 ATG4B PubMed Links

Allele Nomenclature:

Minor Allele Frequency:
1000Genome Applied Biosystems® HapMap
Global
C (0.14)
(0.86)
Caucasian - Not Available CEPH (CEU) - Not Available
EAS
C (0.08)
(0.92)
African American - Not Available YRI (Yoruba) - Not Available
SAS
C (0.07)
(0.93)
Chinese - Not Available CHB (Han Chinese) - Not Available
AFR
C (0.22)
(0.78)
Japanese - Not Available JPT (Japanese) - Not Available
EUR
C (0.17)
(0.83)
AMR
C (0.14)
(0.86)
ATG4B - autophagy related 4B cysteine peptidase
Transcript Accession SNP Location SNP Type Observed Codons Observed Amino Acid Protein ID
NM_013325.4 Intron NP_037457.3
NM_178326.2 Intron NP_847896.1
XM_005246992.3 Intron XP_005247049.2
XM_005246993.2 Intron XP_005247050.2
XM_005246995.3 Intron XP_005247052.1
XM_005246996.2 Intron XP_005247053.1
XM_017003637.1 Intron XP_016859126.1
XM_017003638.1 Intron XP_016859127.1
XM_017003639.1 Intron XP_016859128.1
XM_017003640.1 Intron XP_016859129.1
THAP4 - THAP domain containing 4
Transcript Accession SNP Location SNP Type Observed Codons Observed Amino Acid Protein ID
NM_001164356.1 Intron NP_001157828.1
NM_015963.5 Intron NP_057047.4
XM_005247016.4 Intron XP_005247073.3
XM_011511291.2 Intron XP_011509593.1
XM_017004256.1 Intron XP_016859745.1

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