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See other LOC100287329 GT Assays ›
SNP ID:
rs1800629
Gene
LOC100287329 LTA LTB TNF
Gene Name
Set Membership:
> HapMap > Validated
Chromosome Location:
Chr.6: 31575254 - 31575254 on Build GRCh38
Polymorphism:
A/G, Transition substitution
Context Sequence [VIC/FAM]:

GAGGCAATAGGTTTTGAGGGGCATG[A/G]GGACGGGGTTCAGCCTCCAGGGTCC

Assay ID C___7514879_10
Size
Availability Made To Order
Catalog # 4351379
Price
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Online offer:
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Assay Details



Species:

 Human

dbSNP Submissions:

 NA

Phenotype:

 MIM: 153440 MIM: 600978 MIM: 191160

Literature Links:

 LOC100287329 PubMed Links

Allele Nomenclature:

Minor Allele Frequency:
1000Genome Applied Biosystems® HapMap
Global
A (0.09)
(0.91)
Caucasian - Not Available CEPH (CEU)
A (0.17)
(0.83)
EAS
A (0.06)
(0.94)
African American - Not Available YRI (Yoruba)
A (0.09)
(0.91)
SAS
A (0.05)
(0.95)
Japanese
A (0.00)
(1.00)
JPT (Japanese)
A (0.02)
(0.98)
AFR
A (0.12)
(0.88)
Chinese
A (0.14)
(0.86)
CHB (Han Chinese)
A (0.04)
(0.96)
EUR
A (0.13)
(0.87)
AMR
A (0.07)
(0.93)
LOC100287329 - uncharacterized LOC100287329
There are no transcripts associated with this gene.
LTA - lymphotoxin alpha
Transcript Accession SNP Location SNP Type Observed Codons Observed Amino Acid Protein ID
NM_000595.3 Intron NP_000586.2
NM_001159740.2 Intron NP_001153212.1
XM_011514615.2 Intron XP_011512917.1
XM_011514616.2 Intron XP_011512918.1
XM_011514617.2 Intron XP_011512919.1
XM_011514618.1 Intron XP_011512920.1
LTB - lymphotoxin beta
There are no transcripts associated with this gene.
TNF - tumor necrosis factor
Transcript Accession SNP Location SNP Type Observed Codons Observed Amino Acid Protein ID
NM_000594.3 Intron NP_000585.2

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More Information


Set Membership:

 HapMap Validated

Gene Ontology Categories:

Function(s) Process(es)


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