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SNP ID:
rs4880
Gene
SOD2
Gene Name
Set Membership:
> HapMap > Validated
Chromosome Location:
Chr.6: 159692840 - 159692840 on Build GRCh38
Polymorphism:
A/G, Transition substitution
Context Sequence [VIC/FAM]:

CTGCCTGGAGCCCAGATACCCCAAA[A/G]CCGGAGCCAGCTGCCTGCTGGTGCT

Assay ID C___8709053_10
Size
Availability Made To Order
Catalog # 4351379
Price
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Assay Details



Species:

 Human

dbSNP Submissions:

 NA

Phenotype:

 MIM: 147460

Literature Links:

 SOD2 PubMed Links

Allele Nomenclature:

Minor Allele Frequency:
1000Genome Applied Biosystems® HapMap
Global
C (0.41)
(0.59)
Caucasian
G (0.46)
(0.54)
CEPH (CEU)
C (0.45)
(0.55)
EAS
C (0.13)
(0.87)
African American
G (0.44)
(0.56)
YRI (Yoruba)
C (0.38)
(0.62)
SAS
T (0.49)
(0.51)
Chinese - Not Available JPT (Japanese)
C (0.11)
(0.89)
AFR
C (0.42)
(0.58)
Japanese - Not Available CHB (Han Chinese)
C (0.12)
(0.88)
EUR
C (0.47)
(0.53)
AMR
T (0.42)
(0.58)
SOD2 - superoxide dismutase 2, mitochondrial
Transcript Accession SNP Location SNP Type Observed Codons Observed Amino Acid Protein ID
NM_000636.3 208 Missense Mutation GCT,GTT A,V 16 NP_000627.2
NM_001024465.2 208 Missense Mutation GCT,GTT A,V 16 NP_001019636.1
NM_001024466.2 208 Missense Mutation GCT,GTT A,V 16 NP_001019637.1
NM_001322814.1 208 Missense Mutation GCT,GTT A,V 16 NP_001309743.1
NM_001322815.1 208 Missense Mutation GCT,GTT A,V 16 NP_001309744.1
NM_001322816.1 208 Missense Mutation GCT,GTT A,V 16 NP_001309745.1
NM_001322817.1 208 UTR 5 NP_001309746.1
NM_001322819.1 208 UTR 5 NP_001309748.1
NM_001322820.1 208 UTR 5 NP_001309749.1

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