Assay Details

Gene Symbol: CLN3
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_000086.2	NP_000077.1	9 - 10	1115		105
	NM_001042432.2	NP_001035897.1	10 - 11	923		105
	NM_001286104.2	NP_001273033.1	9 - 10	851		105
	NM_001286105.2	NP_001273034.1	7 - 8	948		105
	NM_001286109.2	NP_001273038.1	7 - 8	956		105
	NM_001286110.2	NP_001273039.1	8 - 9	1028		105
GenBank mRNA	AF015593.1	-	9 - 10	846		105
	AF015594.1	-	8 - 9	807		105
	AF015595.1	-	7 - 8	666		105
	AF015597.1	-	7 - 8	648		105
	AF015598.1	-	7 - 8	600		105
	AF015599.1	-	5 - 6	491		105
	AF015600.1	-	5 - 6	522		105
	AF015601.1	-	4 - 5	436		105
	AF015602.1	-	4 - 5	386		105
	AF077956.1	-	9 - 10	792		105
	AF077957.1	-	9 - 10	792		105
	AF077958.1	-	9 - 10	792		105
	AF077959.1	-	9 - 10	792		105
	AF077960.1	-	8 - 9	648		105
	AF077961.1	-	9 - 10	792		105
	AF077962.1	-	9 - 10	792		105
	AF077963.1	-	9 - 10	792		105
	AF077964.1	-	7 - 8	575		105
	AF077968.1	-	7 - 8	575		105
	AF077969.1	-	5 - 6	406		105
	AF077970.1	-	5 - 6	406		105
	AF077971.1	-	9 - 10	792		105
	AF077973.1	-	7 - 8	633		105
	AK294070.1	-	8 - 9	960		105
	AK297690.1	-	7 - 8	898		105
	AK302027.1	-	9 - 10	819		105
	AK302138.1	-	9 - 10	840		105
	AK313002.1	-	10 - 11	923		105
	BC002394.2	-	10 - 11	909		105
	BC004433.1	-	10 - 11	909		105
	BC111068.1	-	7 - 8	894		105
	EF587245.1	-	3 - 4	292		105
	U32680.1	-	9 - 10	929		105

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1600009861.hg.1
This assay targets the same location as HTA transcript cluster(s) TC16002064.hg.1

Set Membership:

Ambion siRNA available

Amplicon length greater than or equal to 101

Mammalian Gene Collection

Homo sapiens

Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene CLN3

Gene Ontology Categories:

Function(s) Process(es)

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR16014213.hg.1	ENST00000333496.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR16014213.hg.1	ENST00000354630.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR16014213.hg.1	ENST00000355477.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR16014213.hg.1	ENST00000357076.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR16014213.hg.1	ENST00000357806.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR16014213.hg.1	ENST00000357857.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR16014213.hg.1	ENST00000359984.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR16014213.hg.1	ENST00000360019.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR16014213.hg.1	ENST00000395653.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR16014213.hg.1	ENST00000535392.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR16014213.hg.1	NM_000086.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR16014213.hg.1	NM_001042432.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR16014213.hg.1	TC16002064.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000333496.13	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000355477.9	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000357806.11	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000357857.13	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000359984.11	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000360019.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000395653.8	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000561689.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000563874.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000564574.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000565047.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000565140.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000565316.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000565354.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000565778.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000566057.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000566083.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000566824.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000567495.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000567963.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000568076.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000568224.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000568422.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000568452.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000568472.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000568497.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000568558.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000569030.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000569430.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000623866.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000628023.2	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000631023.2	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	NM_000086.2	Refseq
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	NM_001042432.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	NM_001286104.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	NM_001286105.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	NM_001286109.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	NM_001286110.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000333496.13	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000355477.9	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000357806.11	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000357857.13	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000359984.11	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000360019.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000395653.8	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000561689.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000563874.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000564574.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000565047.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000565140.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000565316.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000565354.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000565778.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000566057.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000566083.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000566824.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000567495.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000567963.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000568076.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000568224.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000568422.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000568452.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000568472.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000568497.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000568558.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000569030.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000569430.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000623866.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000628023.2	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	ENST00000631023.2	Ensembl
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	NM_000086.2	Refseq
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	NM_001042432.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	NM_001286104.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	NM_001286105.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	NM_001286109.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	NM_001286110.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600175859.hg.1	TC1600009861.hg.1	Clariom D TC

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Catalog #	4351372
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Genomic Map