Name: [Hs04406384_m1] [LINC01315]
Creator: Thermo Fisher Scientific
Keywords: [LINC01315] Assay, [long intergenic non-protein coding RNA 1315] Assay

Assay Details

Gene Symbol: LINC01315
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_120597.1		1 - 2	150		99
GenBank mRNA	CB050274.1	-	1 - 2	159		99

Interrogated Sequence		Translated Protein	Exon Boundary	Transcript Location	Amplicon Length
GenBankmRNA	AI801908.1	-	1 - 2	Chr. 22 - 42364402 - 42369132 [+] on Build GRCh38	99
GenBankmRNA	BF437089.1	-	1 - 2	Chr. 22 - 42364531 - 42369175 [+] on Build GRCh38	99
GenBankmRNA	CB050273.1	-	1 - 2	Chr. 22 - 42364525 - 42369208 [+] on Build GRCh38	99

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	transcription factor 20	TCF20	AR1, SPBP, TCF-20	-80.5kb	Sense	Chr. 22 - 42160013 - 42283927 on NCBI Build GRCh38
Downstream	NFAT activating protein with ITAM motif 1	NFAM1	CNAIP	11.2kb	Sense	Chr. 22 - 42380407 - 42438155 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC2200008873.hg.1

Set Membership:

Amplicon length between 86 and 100

3' Most

Homo sapiens

Probe spans exons

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	ENST00000412060.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	ENST00000412060.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	ENST00000412060.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	ENST00000412060.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	ENST00000424852.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	ENST00000424852.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	ENST00000424852.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	ENST00000424852.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	ENST00000424852.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	ENST00000424852.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	ENST00000432473.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	ENST00000432473.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	ENST00000432473.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	ENST00000432473.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	NR_120595.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	NR_120595.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	NR_120595.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	NR_120595.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	NR_120595.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	NR_120595.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	NR_120596.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	NR_120596.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	NR_120596.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	NR_120596.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	NR_120596.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	NR_120597.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	NR_120597.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	NR_120597.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2200008873.hg.1	NR_120597.1	Refseq
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	ENST00000412060.1	Ensembl
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	ENST00000412060.1	Ensembl
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	ENST00000412060.1	Ensembl
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	ENST00000412060.1	Ensembl
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	ENST00000424852.1	Ensembl
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	ENST00000424852.1	Ensembl
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	ENST00000424852.1	Ensembl
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	ENST00000424852.1	Ensembl
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	ENST00000424852.1	Ensembl
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	ENST00000424852.1	Ensembl
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	ENST00000432473.1	Ensembl
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	ENST00000432473.1	Ensembl
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	ENST00000432473.1	Ensembl
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	ENST00000432473.1	Ensembl
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	NR_120595.1	Refseq
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	NR_120595.1	Refseq
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	NR_120595.1	Refseq
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	NR_120595.1	Refseq
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	NR_120595.1	Refseq
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	NR_120595.1	Refseq
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	NR_120596.1	Refseq
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	NR_120596.1	Refseq
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	NR_120596.1	Refseq
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	NR_120596.1	Refseq
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	NR_120596.1	Refseq
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	NR_120597.1	Refseq
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	NR_120597.1	Refseq
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	NR_120597.1	Refseq
Affymetrix Human Clariom D Assay	TC2200008873.hg.1	NR_120597.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164286.hg.1	ENST00000412060.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200164286.hg.1	ENST00000424852.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200164286.hg.1	ENST00000432473.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200164286.hg.1	NR_120595.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164286.hg.1	NR_120596.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164286.hg.1	NR_120597.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164286.hg.1	TC2200008873.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR2200164286.hg.1	ENST00000412060.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200164286.hg.1	ENST00000424852.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200164286.hg.1	ENST00000432473.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200164286.hg.1	NR_120595.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164286.hg.1	NR_120596.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164286.hg.1	NR_120597.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164289.hg.1	ENST00000412060.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200164289.hg.1	ENST00000424852.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200164289.hg.1	ENST00000432473.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200164289.hg.1	NR_120595.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164289.hg.1	NR_120596.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164289.hg.1	NR_120597.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164289.hg.1	TC2200008873.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR2200164289.hg.1	ENST00000412060.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200164289.hg.1	ENST00000424852.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200164289.hg.1	ENST00000432473.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200164289.hg.1	NR_120595.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164289.hg.1	NR_120596.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164289.hg.1	NR_120597.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164291.hg.1	ENST00000412060.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200164291.hg.1	ENST00000424852.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200164291.hg.1	NR_120595.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164291.hg.1	NR_120596.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164291.hg.1	NR_120597.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164291.hg.1	TC2200008873.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR2200164291.hg.1	ENST00000412060.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200164291.hg.1	ENST00000424852.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200164291.hg.1	NR_120595.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164291.hg.1	NR_120596.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164291.hg.1	NR_120597.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164284.hg.1	ENST00000412060.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200164284.hg.1	ENST00000432473.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200164284.hg.1	NR_120595.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164284.hg.1	NR_120596.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164284.hg.1	NR_120597.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164284.hg.1	TC2200008873.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR2200164284.hg.1	ENST00000412060.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200164284.hg.1	ENST00000432473.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200164284.hg.1	NR_120595.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164284.hg.1	NR_120596.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200164284.hg.1	NR_120597.1	Refseq

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Catalog #	4426961
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System Message

Genomic Map