Assay Details

Gene Symbol: Ctcf
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_031824.1	NP_114012.1	10 - 11	2007		105
	XM_008772537.1	XP_008770759.1	8 - 9	1974		105
	XM_008772539.1	XP_008770761.1	8 - 9	1974		105
GenBank mRNA	AF133731.2	-	10 - 11	2043		105

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1900000485.rn.1

Set Membership:

Ambion siRNA available

Amplicon length greater than or equal to 101

3' Most

Rattus norvegicus

1700

Inventoried

Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Ctcf

Panther Classification:

Molecular Function -

C2H2 zinc finger transcription factor

Gene Ontology Categories:

Function(s) Process(es)

MicroArray Probes:

Agilent Affymetrix ABI Illumina

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P630249	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	812701	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	332335	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	41229	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	810421	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	235055	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	760725	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	558591	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	164459	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	476729	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	153746	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	37177	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	554709	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	746312	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	365041	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	53796	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	321196	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	90177	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	783080	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	849096	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	704493	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	518949	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	458063	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	827257	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	483948	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	873310	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	246840	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	258557	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	899171	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	621295	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	592796	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	267782	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	739273	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	566410	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	360607	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	632996	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	156459	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	828801	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	117370	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	76344	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	139683	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	122587	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	17527	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	180150	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P630249	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P630249	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_42_P630249	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P630249	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	701337620	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	87235	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	75215	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	1303	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	55388	-	-
Agilent Rat cDNA Microarray (G4105A)	701337620	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10807305	-	-
Affymetrix Rat Gene 1.0 ST Array	10807307	-	-
Affymetrix Rat Gene 1.0 ST Array	10807308	-	-
Affymetrix Rat Gene 1.0 ST Array	10807301	-	-
Affymetrix Rat Gene 1.0 ST Array	10807302	-	-
Affymetrix Rat Gene 1.0 ST Array	10807303	-	-
Affymetrix Rat Gene 1.0 ST Array	10807309	-	-
Affymetrix Rat Gene 1.0 ST Array	10807310	-	-
Affymetrix Rat Gene 1.0 ST Array	10807304	-	-
Affymetrix Rat Gene 1.0 ST Array	10807306	-	-
Affymetrix Rat Gene 1.1 ST Array	10807300	-	-
Rat Genome 230 2.0 Array	1370337_PM_at	-	-
Rat Genome 230 2.0 Array	1370337_at	-	-
Affymetrix HT Rat Focus Array	1370337_at	-	-
Affymetrix HT Rat Focus Array	1370337_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1900004055.rn.1	TC1900000485.rn.1	RTA TC
Rat Expression Set 230	1370337_PM_at	-	-
Rat Expression Set 230	1370337_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10807300	-	-
Rat Genome U34 Set	rc_AI030850_at	-	-

Availability	Inventoried
Catalog #	4331182
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System Message

Genomic Map