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          • Home
          • › Search Tool
          • › Search Results
          • › Rn01410397_m1
          See other SHH GE Assays ›
          Gene Symbol:
          Shh
          Gene Name:
          sonic hedgehog
          Gene Aliases:
          -
          Chromosome Location:
          Chr.4: 718538 - 727691 on Build Rnor_6.0
          Species:
          Rat
          Species Specific ID (Flybase ID):
          -
          Assay ID Rn01410397_m1
          Size
          Availability Made To Order
          Catalog # 4351372
          Price 435.00
          Your Price
          Online offer: 408.65
          408.65
          Check your price ›
          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Shh
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_017221.1 NP_058917.1 1 - 2 613 143
          GenBank mRNA L27340.1 - 1 - 2 613 143

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          More Information


          Updated Mapping Information

          This assay targets the same location as RTA transcript cluster(s) TC0400002110.rn.1

          Set Membership:

          Ambion siRNA available Amplicon length greater than or equal to 101 Protease Rattus norvegicus Probe spans exons

          Matching Ambion siRNAs:

          Click here to find siRNAs for Gene Shh

          Gene Ontology Categories:

          Function(s) Process(es)

          negative regulation of transcription from RNA polymerase II promoter
          angiogenesis
          patterning of blood vessels
          vasculogenesis
          metanephros development
          branching involved in ureteric bud morphogenesis
          response to hypoxia
          cell fate specification
          neural crest cell migration
          kidney development
          neural tube formation
          hair follicle development
          vasculature development
          heart looping
          positive regulation of neuroblast proliferation
          positive regulation of mesenchymal cell proliferation
          osteoblast development
          lymphoid progenitor cell differentiation
          determination of left/right asymmetry in lateral mesoderm
          regulation of transcription, DNA-templated
          proteolysis
          endocytosis
          apoptotic process
          smoothened signaling pathway
          positive regulation of hh target transcription factor activity
          cell-cell signaling
          determination of left/right symmetry
          pattern specification process
          ectoderm development
          neuroblast proliferation
          axon guidance
          central nervous system development
          hindgut morphogenesis
          digestive tract mesoderm development
          heart development
          blood coagulation
          androgen metabolic process
          cell proliferation
          positive regulation of cell proliferation
          polarity specification of anterior/posterior axis
          anterior/posterior pattern specification
          dorsal/ventral pattern formation
          response to organonitrogen compound
          mesenchymal cell proliferation
          regulation of gene expression
          positive regulation of gene expression
          negative regulation of gene expression
          oligodendrocyte development
          striated muscle tissue development
          positive regulation of skeletal muscle cell proliferation
          myotube differentiation
          intein-mediated protein splicing
          spinal cord dorsal/ventral patterning
          ventral spinal cord interneuron specification
          spinal cord motor neuron differentiation
          thalamus development
          dorsal/ventral neural tube patterning
          cerebellar granule cell precursor proliferation
          smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation
          positive regulation of cerebellar granule cell precursor proliferation
          telencephalon regionalization
          establishment of cell polarity
          regulation of proteolysis
          positive regulation of Wnt signaling pathway
          negative regulation of Wnt signaling pathway
          respiratory tube development
          lung development
          embryonic limb morphogenesis
          negative regulation of cell migration
          male genitalia development
          prostate gland development
          regulation of epithelial cell differentiation
          thyroid gland development
          forebrain development
          midbrain development
          hindbrain development
          pancreas development
          hair follicle morphogenesis
          response to estradiol
          negative regulation of proteasomal ubiquitin-dependent protein catabolic process
          response to retinoic acid
          T cell differentiation in thymus
          positive regulation of T cell differentiation in thymus
          positive regulation of immature T cell proliferation in thymus
          negative regulation of transcription elongation from RNA polymerase II promoter
          protein localization to nucleus
          embryonic forelimb morphogenesis
          embryonic hindlimb morphogenesis
          regulation of cell proliferation
          negative regulation of T cell proliferation
          negative regulation of protein catabolic process
          positive regulation of protein import into nucleus
          odontogenesis of dentin-containing tooth
          odontogenesis
          regulation of odontogenesis
          embryonic digit morphogenesis
          camera-type eye development
          negative regulation of apoptotic process
          CD4-positive or CD8-positive, alpha-beta T cell lineage commitment
          tongue development
          tongue morphogenesis
          skin development
          positive thymic T cell selection
          negative thymic T cell selection
          intermediate filament organization
          cell fate commitment
          myoblast differentiation
          response to ethanol
          negative regulation of cell differentiation
          positive regulation of cell differentiation
          positive regulation of neuron differentiation
          positive regulation of smoothened signaling pathway
          positive regulation of transcription, DNA-templated
          positive regulation of transcription from RNA polymerase II promoter
          positive regulation of photoreceptor cell differentiation
          positive regulation of alpha-beta T cell differentiation
          negative regulation of alpha-beta T cell differentiation
          cell development
          thymus development
          digestive tract morphogenesis
          embryonic digestive tract morphogenesis
          embryonic organ development
          developmental growth
          embryonic morphogenesis
          embryonic foregut morphogenesis
          positive regulation of skeletal muscle tissue development
          organ formation
          anatomical structure formation involved in morphogenesis
          neuron fate commitment
          response to axon injury
          embryonic skeletal system development
          oligodendrocyte differentiation
          positive regulation of oligodendrocyte differentiation
          branching morphogenesis of an epithelial tube
          male genitalia morphogenesis
          inner ear development
          anatomical structure development
          formation of anatomical boundary
          stem cell development
          striated muscle cell differentiation
          positive regulation of striated muscle cell differentiation
          positive regulation of cell division
          Bergmann glial cell differentiation
          palate development
          canonical Wnt signaling pathway
          limb development
          limb bud formation
          positive regulation of penile erection
          lung morphogenesis
          lung epithelium development
          trachea development
          trachea morphogenesis
          epithelial tube branching involved in lung morphogenesis
          branching involved in prostate gland morphogenesis
          branching involved in salivary gland morphogenesis
          bud outgrowth involved in lung branching
          right lung development
          left lung development
          lung lobe morphogenesis
          lung-associated mesenchyme development
          prostatic bud formation
          primary prostatic bud elongation
          prostate epithelial cord elongation
          salivary gland cavitation
          epithelial cell proliferation involved in salivary gland morphogenesis
          epithelial-mesenchymal cell signaling
          regulation of prostatic bud formation
          epithelial-mesenchymal signaling involved in prostate gland development
          regulation of epithelial cell proliferation involved in prostate gland development
          positive regulation of epithelial cell proliferation involved in prostate gland development
          regulation of mesenchymal cell proliferation involved in prostate gland development
          mesenchymal smoothened signaling pathway involved in prostate gland development
          artery development
          mesenchymal cell proliferation involved in lung development
          somite development
          positive regulation of sclerotome development
          fungiform papilla development
          fungiform papilla morphogenesis
          fungiform papilla formation
          positive regulation of oligodendrocyte progenitor proliferation
          cellular response to lithium ion
          renal system development
          metanephric mesenchymal cell proliferation involved in metanephros development
          multicellular structure septum development
          negative regulation of canonical Wnt signaling pathway
          negative regulation of cholesterol efflux
          apoptotic signaling pathway
          regulation of protein localization to nucleus
          negative regulation of ureter smooth muscle cell differentiation
          positive regulation of ureter smooth muscle cell differentiation
          negative regulation of kidney smooth muscle cell differentiation
          positive regulation of kidney smooth muscle cell differentiation
          positive regulation of mesenchymal cell proliferation involved in ureter development
          negative regulation of mesenchymal cell apoptotic process
          glycoprotein binding
          receptor binding
          patched binding
          calcium ion binding
          protein binding
          glycosaminoglycan binding
          peptidase activity
          zinc ion binding
          hydrolase activity
          laminin-1 binding

          MicroArray Probes:

          Affymetrix

          Array Name Probe IDs Targets Target Type
          Affymetrix Rat Clariom S Assay PSR0400015081.rn.1 TC0400002110.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0400015082.rn.1 TC0400002110.rn.1 RTA TC

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          Host server : magellan-search-blue-67655d8755-b2k9d:80/100.66.79.173:80.
          git-commit: dddaa802cd395f65bf1581942d0e97a089c38f41
          git-url: https://github.com/thermofisher/magellan-search
          git-branch: release/2.46.0-Offline