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- Gene Symbol:
-
Col4a1 - Gene Name:
- collagen, type IV, alpha 1
- Gene Aliases:
- -
- Chromosome Location:
- Chr.16: 83522162 - 83632153 on Build Rnor_6.0
- Species:
- Rat
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Col4a1 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_001135009.1 | NP_001128481.1 | 51 - 52 | 5131 | 136 | |
| GenBank mRNA | BC089096.1 | - | 5 - 6 | 712 | 136 | |
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC1600001009.rn.1Set Membership: |
Amplicon length greater than or equal to 101
3' Most
Mammalian Gene Collection
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Panther Classification:
Gene Ontology Categories:
Function(s)
Process(es)
patterning of blood vessels
brain development
neuromuscular junction development
epithelial cell differentiation
blood vessel morphogenesis
retinal blood vessel morphogenesis
renal tubule morphogenesis
cellular response to amino acid stimulus
basement membrane organization
molecular_function
extracellular matrix structural constituent
platelet-derived growth factor binding
patterning of blood vessels
brain development
neuromuscular junction development
epithelial cell differentiation
blood vessel morphogenesis
retinal blood vessel morphogenesis
renal tubule morphogenesis
cellular response to amino acid stimulus
basement membrane organization
molecular_function
extracellular matrix structural constituent
platelet-derived growth factor binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P293606 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P149501 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 821880 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 494964 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 242634 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 447742 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 721569 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 486491 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 504402 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 195591 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 488885 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 311942 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 664378 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 281964 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 289298 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 900930 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 211847 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 192184 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 399055 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 98283 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 629722 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 427219 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 340465 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 424997 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 704733 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 767062 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 247714 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 320432 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 486512 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 134031 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 537745 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 574389 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 788946 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 798303 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 57217 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 733711 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 780010 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 469571 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 378307 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 105876 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 937765 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 161105 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 185375 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 367448 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 512811 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 561221 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 461911 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 574285 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 585988 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 805173 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 77409 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 603356 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 705373 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 461472 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 508961 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 38488 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 677034 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 220279 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 784660 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 967357 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 256604 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 391512 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 806372 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 898078 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 957750 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 76165 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 168938 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 302312 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 459105 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 51673 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 125912 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 303413 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 607431 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 711530 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 468131 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 233339 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 1417 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 123512 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 662115 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 306221 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 651217 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 567624 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 54012 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 178235 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 135206 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 92686 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 3262 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 74543 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 56686 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 104421 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 11098 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 157040 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 116753 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 22962 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 135025 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 30642 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P149501 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P293606 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P293606 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P149501 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P149501 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P293606 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P1070510 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P1021644 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 125 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10789599 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789629 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789633 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789634 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789620 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789601 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789605 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789623 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789627 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789596 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789597 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789607 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789649 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789641 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789628 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789625 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789637 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789595 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789598 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789632 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789639 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789650 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789648 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789652 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789603 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789610 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789631 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789606 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789619 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789609 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789600 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789635 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789643 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789645 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789642 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789647 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789621 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789616 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789615 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789630 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789618 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789640 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789624 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789636 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789622 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789651 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789644 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789617 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789612 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789614 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789608 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789602 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789604 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789611 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789646 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789613 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789626 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789638 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10789594 | - | - |
| Rat Genome 230 2.0 Array | 1372439_at | - | - |
| Rat Genome 230 2.0 Array | 1372439_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1373245_at | - | - |
| Rat Genome 230 2.0 Array | 1373245_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1372439_at | - | - |
| Affymetrix HT Rat Focus Array | 1372439_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1373245_at | - | - |
| Affymetrix HT Rat Focus Array | 1373245_PM_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR1600007680.rn.1 | TC1600001009.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1600007678.rn.1 | TC1600001009.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1600007679.rn.1 | TC1600001009.rn.1 | RTA TC |
| Rat Expression Set 230 | 1373245_at | - | - |
| Rat Expression Set 230 | 1373245_PM_at | - | - |
| Rat Expression Set 230 | 1372439_at | - | - |
| Rat Expression Set 230 | 1372439_PM_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10789594 | - | - |
| Rat Genome U34 Set | rc_AA964892_at | - | - |
| Rat Genome U34 Set | rc_AI175875_i_at | - | - |
| Rat Genome U34 Set | rc_AI175875_s_at | - | - |
| Rat Genome U34 Set | rc_AI176393_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 22117229 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1360318 | - | - |
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