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Amira Software for Neuroimaging

3D neuroimaging software for visualization and analysis

Thermo Scientific Amira Software is the leading 3D visualization and analysis platform for neuroscience. It integrates, visualizes, and analyzes complex neuroimaging data from EM technologies, MRI, CT, and other modalities. With advanced AI tools for denoising and segmentation, Amira Software enhances image clarity and accuracy, enabling detailed 3D reconstructions of brain structures and precise analysis from individual neurons to entire brain regions. It supports multi-channel 3D imaging and time-series data analysis, and it offers scripting capabilities for workflow automation, enhancing the understanding of neural pathways and brain functions.

Applications

Neuronal cellular analysis

Analyze cellular structures within the brain to reveal the organization, morphology, and interactions of neuronal components.

Filament detection

Neuron and vessel tracing. Automating segmentation, filament detection, and network reconstruction to reduce manual effort and boost productivity.

Whole brain imaging

Processing large multichannel datasets acquired by light sheet or confocal microscopy without size or memory limitations.

DTI data analysis

Providing advanced tools for creating and utilizing brain atlases, tracing neuronal connectivity, and robust image registration.

Featured use cases

Structural analysis of plasma membrane, actin filaments, and synaptic vesicles using cryo-electron tomography and Amira Software.

Nanoscale brain imaging with focused ion beam scanning electron microscope (FIB-SEM) and Amira Software.

3D reconstruction of rod photoreceptor synapses using serial block-face scanning electron microscopy (SBF-SEM) and Amira Software.

3D imaging and pathological analysis of microglia in LPS-treated mice with light-sheet fluorescence microscopy enhanced through Amira Software based segmentation and visualization.

Integrating Amira Software with high-resolution episcopic microscopy (HREM) for 3D volumetric analyses of the adult mouse brain.

3D Reconstruction of Beagle brain structure using magnetic resonance imaging, computed tomography and Amira Software.

Webinars

Introduction to brain visualization and analysis with Amira Software

In this webinar, you will learn how to integrate multimodal imaging data from MRI, CT, and microscopy into unified 3D and 4D models for comprehensive brain analysis. Discover techniques for using advanced visualization tools to explore brain structures, and methods for applying powerful segmentation, registration, and quantification algorithms to extract and analyze complex neural data.

Demonstration of brain visualization and analysis with Amira Software

Join our hands-on session to learn how to apply advanced 3D and 4D visualization and analysis tools in Amira Software. Discover how to integrate multimodal imaging data, explore brain structures, and apply segmentation, registration, and quantification algorithms to enhance your neuroscience research.

Customer testimonials

Experience Amira Software

Working with complex neuroimaging data? Amira Software makes it clearer.

 

As the leading 3D platform for neuroscience, Amira Software uses advanced AI to denoise, segment, and visualize MRI, CT, and microscopy datasets, delivering accurate 3D reconstructions from single neurons to whole brain regions.

 

Request a trial and see how Amira Software can elevate your research.

Video gallery

For Research Use Only. Not for use in diagnostic procedures.