Figure 1: Simple user interface for loading Axiom genotyping data.
Axiom CNV Summary Tools Software
The Axiom CNV summary tools use intensity and genotypes to calculate log2 ratios and B allele frequencies from genotyping data. Also included in the Axiom CNV Summary Tools Software package is Affymetrix CNV Viewer, which allows visualization of copy number changes across the genome. For a more comprehensive analysis, the Axiom CNV Summary Tools Software files are compatible for use with BioDiscovery Nexus Copy Number™ Software and PennCNV Software.
To obtain the latest version of Axiom CNV Summary Tools Software please use the link below:
This version is supported on Windows™ 7 (64-bit) and Windows 8 Pro (64-bit). Please refer to the release notes for information on installation requirements by selecting the link above.
- The software automatically calculates log2 ratios and B allele frequencies from Axiom genotyping experiments
- A simple user interface allows you to easily select Axiom data for CNV analysis (Figure 1)
- Select samples on the Axiom Array Plate as a reference set, or specify your own reference data
- The Axiom CNV Viewer lets you visualize data and zoom in for inspection down to a single marker
- Export files compatible for use with BioDiscovery Nexus Copy Number Software and Penn CNV Software
Figure 2: Display log2 ratios and BAFs for visual inspection across the genome.
- Axiom Human Genotyping Solution
- Axiom Exome Genotyping Arrays
- Axiom Biobank Genotyping Arrays
- Axiom Population-Focused Arrays
- Axiom miRNA Target Site Genotyping Arrays
- Axiom myDesign Human Genotyping Arrays
- Affymetrix Tools
- Genotyping Console Software
- Affymetrix GeneChip Command Console Software (AGCC)
- GeneChip-Compatible Software Providers
For Research Use Only. Not for use in diagnostic procedures.