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See other SPECC1 CNV Assays ›
Gene Symbol
SPECC1
Assay Reference Genome
Location

Chr.17:20018103 on build GRCh38
Cytoband
Assay ID Hs05518105_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 92521

Gene Name:

 sperm antigen with calponin homology and coiled-coil domains 1

Gene Aliases:

 CYTSB, HCMOGT-1, HCMOGT1, NSP, NSP5

Location:

 Chr.17:20009359-20319026 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 5 - Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SPECC1 NM_001243439.2 NP_001230368.1
NM_001386078.2 NP_001373007.1
NM_001386079.1 NP_001373008.1
NM_001386080.1 NP_001373009.1
NM_001386081.1 NP_001373010.1
NM_001386082.1 NP_001373011.1
NM_001386083.2 NP_001373012.2
NM_001386084.1 NP_001373013.1
NM_001386085.1 NP_001373014.1
XM_017025319.2 XP_016880808.1
XM_017025325.2 XP_016880814.1
XM_047437063.1 XP_047293019.1
XM_047437064.1 XP_047293020.1
XM_047437065.1 XP_047293021.1
XM_047437066.1 XP_047293022.1
XM_047437067.1 XP_047293023.1
XM_047437069.1 XP_047293025.1
XM_047437071.1 XP_047293027.1
AK295093.1 BAG58132.1
DA058164.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2025-12-01, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv4233622 Chr.17:19744856 - 20120713 on Build GRCh38 Duplication SPECC1-DT ULK2 SPECC1 LOC100131943 AKAP10 ALDH3A1
nsv1061317 Chr.17:19047542 - 20322438 on Build GRCh38 Gain MAPK7 EPN2-AS1 SNORA59B GRAPL GRAPL-AS1 SNORD3C LOC105371574 ULK2 SNORD3B-2 GRAP RPS2P46 SLC47A2 B9D1 LOC102724624 CCDC144CP EPN2 SPECC1 EPN2-IT1 SNORD3D SNORD3A LINC02094 SLC47A1P2 AKAP10 MFAP4 LOC388436 MIR1180 SPECC1-DT LOC100131943 RNF112 SNORD3B-1 ALDH3A2 SLC47A1 ALDH3A1
nsv833394 Chr.17:19924401 - 20096264 on Build GRCh38 Gain SPECC1-DT SPECC1 LOC100131943 AKAP10

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More Information


Additional Information:

For this assay, SNP(s) [rs113189820] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s)


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