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See other GCNT2 CNV Assays ›
Gene Symbol
GCNT2
Assay Reference Genome
Location

Chr.6:10614140 on build GRCh38
Cytoband
Assay ID Hs06136028_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2651

Gene Name:

 glucosaminyl (N-acetyl) transferase 2 (I blood group)

Gene Aliases:

 CCAT, CTRCT13, GCNT2C, GCNT5, IGNT, II, NACGT1, NAGCT1, ULG3, bA360O19.2, bA421M1.1

Location:

 Chr.6:32235-140252 on Build GRCh38

Assay Gene Location:

 Within Intron 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
GCNT2 NM_001374747.1 NP_001361676.1
NM_001491.3 NP_001482.1
NM_145649.5 NP_663624.1
NM_145655.4 NP_663630.2
XM_005248999.3 XP_005249056.1
XM_006715052.4 XP_006715115.1
XM_047418633.1 XP_047274589.1
AB078432.1 BAC66781.1
AB078433.1 BAC66782.1
AF401652.1 AAL50561.1
AF401653.1 AAL50562.1
AF458024.1 AAM73864.1
AF458025.1 AAM73865.1
AF458026.1 AAM73866.1
AK090483.1 BAC03464.1
AK098105.1 BAC05234.1
AK291195.1 BAF83884.1
AK291767.1 BAF84456.1
AK307329.1
AK307337.1
AK307373.1
AK313426.1 BAG36218.1
AK313903.1 BAG36626.1
AL832714.1
AL832719.1
AY435145.1 AAR95646.1
AY435146.1 AAR95647.1
AY435147.1 AAR95648.1
BC074801.2 AAH74801.1
BC074802.2 AAH74802.1
BC130524.1 AAI30525.1
BX647576.1 CAI46081.1
BX647668.1
L19659.1 AAA81777.1
Z19550.1 CAA79610.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2025-12-01, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv3113907 Chr.6:10481673 - 10698466 on Build GRCh38 Deletion GCNT2 C6orf52 LINC02522 PAK1IP1
nsv6399788 Chr.6:10495714 - 10615476 on Build GRCh38 Deletion GCNT2
nsv600988 Chr.6:10501021 - 10614845 on Build GRCh38 Loss GCNT2
nsv966670 Chr.6:10447438 - 10871656 on Build GRCh38 Duplication GCNT2 MAK TMEM14B-DT TMEM14B C6orf52 LINC02522 MIR5689HG PAK1IP1 TMEM14C
nsv600979 Chr.6:10449025 - 10839526 on Build GRCh38 Gain GCNT2 MAK TMEM14B-DT TMEM14B C6orf52 LINC02522 MIR5689HG PAK1IP1 TMEM14C
nsv6404362 Chr.6:10545723 - 10821818 on Build GRCh38 Duplication GCNT2 MAK TMEM14B-DT TMEM14B C6orf52 PAK1IP1 TMEM14C
nsv470800 Chr.6:10538711 - 10863092 on Build GRCh38 Gain GCNT2 MAK TMEM14B-DT TMEM14B C6orf52 PAK1IP1 TMEM14C
nsv6403222 Chr.6:10465448 - 10718419 on Build GRCh38 Deletion GCNT2 C6orf52 LINC02522 PAK1IP1
esv2759406 Chr.6:10443564 - 10642899 on Build GRCh38 Loss GCNT2 LINC02522 MIR5689HG

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