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- Gene Symbol
- NFATC1
- Assay Reference Genome
Location
Chr.18:79402199 on build GRCh38- Cytoband
- 18q23
Genomic Map
Back To TopAssay Details
Target Gene Details
Entrez Gene ID: | 4772 |
Gene Name: | nuclear factor of activated T-cells 1 |
Gene Aliases: |
NF-ATC, NF-ATc1.2, NFAT2, NFATc |
Location: |
Chr.18:79395772-79529323 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| NFATC1 | NM_001278669.1 | NP_001265598.1 | ||
| NM_001278670.1 | NP_001265599.1 | |||
| NM_001278672.1 | NP_001265601.1 | |||
| NM_001278673.1 | NP_001265602.1 | |||
| NM_001278675.1 | NP_001265604.1 | |||
| NM_006162.4 | NP_006153.2 | |||
| NM_172387.2 | NP_765975.1 | |||
| NM_172388.2 | NP_765976.1 | |||
| NM_172389.2 | NP_765977.1 | |||
| NM_172390.2 | NP_765978.1 | |||
| XM_017025783.1 | XP_016881272.1 | |||
| AK292641.1 | ||||
| AK293760.1 | ||||
| BC104753.1 | AAI04754.1 | |||
| BC112243.1 | AAI12244.1 | |||
| EU887559.1 | ||||
| EU887560.1 | ||||
| EU887561.1 | ||||
| EU887562.1 | ||||
| EU887563.1 | ||||
| EU887564.1 | ||||
| EU887565.1 | ||||
| EU887566.1 | ||||
| HY039825.1 | ||||
| U08015.1 | AAA19601.1 | |||
| U59736.1 | AAC50869.1 | |||
| U80917.1 | AAD00450.1 | |||
| U80918.1 | AAD00451.1 | |||
| U80919.1 | AAD00452.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| esv3643295 | Chr.18:79233586 - 79591185 on Build GRCh38 | Gain |
 NFATC1
LOC284240
LOC107985149
ATP9B
|
| nsv577877 | Chr.18:79388973 - 79404443 on Build GRCh38 | Loss |
NFATC1
|
| nsv428359 | Chr.18:79277548 - 80255221 on Build GRCh38 | Gain |
CTDP1
ADNP2
HSBP1L1
RBFADN
PARD6G
RBFA
LOC284240
LOC284241
LOC107985149
ATP9B
NFATC1
KCNG2
TXNL4A
PARD6G-AS1
PQLC1
LOC105376875
|
| nsv509706 | Chr.18:79315089 - 79446158 on Build GRCh38 | Insertion |
NFATC1
LOC107985149
ATP9B
|
| nsv953569 | Chr.18:79395201 - 79465800 on Build GRCh38 | Deletion |
NFATC1
|
| nsv525694 | Chr.18:79395184 - 79961125 on Build GRCh38 | Loss |
NFATC1
CTDP1
KCNG2
PQLC1
LOC105376875
LOC284240
LOC284241
|
| esv2717497 | Chr.18:78170182 - 79635788 on Build GRCh38 | Deletion |
NFATC1
LOC100996274
SALL3
LOC284240
LOC107985149
ATP9B
|
| nsv1141945 | Chr.18:78170394 - 79635820 on Build GRCh38 | Deletion |
NFATC1
LOC100996274
SALL3
LOC284240
LOC107985149
ATP9B
|
| nsv577873 | Chr.18:79309720 - 79447124 on Build GRCh38 | Gain |
NFATC1
LOC107985149
ATP9B
|
| nsv577794 | Chr.18:78951366 - 79472709 on Build GRCh38 | Gain |
NFATC1
LOC100996274
SALL3
LOC107985149
ATP9B
|
| nsv1065064 | Chr.18:79091898 - 79405383 on Build GRCh38 | Gain |
NFATC1
LOC100996274
LOC107985149
ATP9B
|
| nsv2380 | Chr.18:79379557 - 79413441 on Build GRCh38 | Insertion |
NFATC1
|
| nsv828344 | Chr.18:79392644 - 79413780 on Build GRCh38 | Gain |
NFATC1
|
| nsv1065902 | Chr.18:78538045 - 80257174 on Build GRCh38 | Gain |
CTDP1
ADNP2
HSBP1L1
RBFADN
PARD6G
RBFA
LOC284240
LOC284241
LOC107985149
ATP9B
NFATC1
KCNG2
TXNL4A
LOC100996274
PARD6G-AS1
PQLC1
LOC105376875
SALL3
|
| nsv577875 | Chr.18:79339963 - 79472709 on Build GRCh38 | Loss |
NFATC1
LOC107985149
ATP9B
|
| esv2760476 | Chr.18:79224569 - 79439105 on Build GRCh38 | Gain+Loss |
NFATC1
LOC107985149
ATP9B
|
Back To TopMore Information
Additional Information:
For this assay, SNP(s) [rs139157786] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Intronic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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