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See other APEX2 CNV Assays ›
Gene Symbol
APEX2
Assay Reference Genome
Location

Chr.X:55006622 on build GRCh38
Cytoband
Assay ID Hs02858591_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 27301

Gene Name:

 apurinic/apyrimidinic endodeoxyribonuclease 2

Gene Aliases:

 APE2, APEXL2, XTH2, ZGRF2

Location:

 Chr.X:55000363-55009057 on Build GRCh38

Assay Gene Location:

 Within Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
APEX2 NM_001271748.2 5 623 NP_001258677.1
NM_014481.4 6 804 NP_055296.2
AB021260.1 6 804 BAA78422.1
AB049211.1 6 767 BAB13764.1
AF119046.1 6 810 AAD43041.1
AJ011311.1 6 810 CAB45242.1
AK301555.1 5 618 BAG63051.1
AK316186.1 5 616 BAH14557.1
BC002959.1 6 782 AAH02959.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2025-12-01, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2740175 Chr.X:52862926 - 55652533 on Build GRCh38 Deletion HUWE1 GNL3L FOXR2 MAGEH1 SNORA11 PFKFB1 PHF8 FAM156A APEX2 HSD17B10 MIR6895 FAM120C WNK3 SNORA109 MIR4536-2 PAGE2B MIR4536-1 XAGE3 MIRLET7F2 KDM5C TRO ITIH6 PAGE5 RIBC1 MIR6894 FAM156B MIR6857 USP51 SMC1A TSR2 VCF2 TSPYL2 KANTR SNORA11G ALAS2 MAGED2 PAGE2 FGD1 PAGE3 IQSEC2 GPR173 LOC100421746 MIR98
esv3573984 Chr.X:54997314 - 55007120 on Build GRCh38 Loss PFKFB1 APEX2
nsv435891 Chr.X:52861979 - 55653313 on Build GRCh38 Deletion HUWE1 GNL3L FOXR2 MAGEH1 SNORA11 PFKFB1 PHF8 FAM156A APEX2 HSD17B10 MIR6895 FAM120C WNK3 SNORA109 MIR4536-2 PAGE2B MIR4536-1 XAGE3 MIRLET7F2 KDM5C TRO ITIH6 PAGE5 RIBC1 MIR6894 FAM156B MIR6857 USP51 SMC1A TSR2 VCF2 TSPYL2 KANTR SNORA11G ALAS2 MAGED2 PAGE2 FGD1 PAGE3 IQSEC2 GPR173 LOC100421746 MIR98
nsv5882057 Chr.X:52862950 - 55652570 on Build GRCh38 Deletion HUWE1 GNL3L FOXR2 MAGEH1 SNORA11 PFKFB1 PHF8 FAM156A APEX2 HSD17B10 MIR6895 FAM120C WNK3 SNORA109 MIR4536-2 PAGE2B MIR4536-1 XAGE3 MIRLET7F2 KDM5C TRO ITIH6 PAGE5 RIBC1 MIR6894 FAM156B MIR6857 USP51 SMC1A TSR2 VCF2 TSPYL2 KANTR SNORA11G ALAS2 MAGED2 PAGE2 FGD1 PAGE3 IQSEC2 GPR173 LOC100421746 MIR98
nsv4043617 Chr.X:54900899 - 55348231 on Build GRCh38 Duplication SNORA11G ALAS2 SNORA109 PAGE2 PAGE2B PAGE3 PFKFB1 TRO VCF2 LOC100421746 PAGE5 APEX2
nsv6107009 Chr.X:52861028 - 55652526 on Build GRCh38 Duplication HUWE1 GNL3L FOXR2 MAGEH1 SNORA11 PFKFB1 PHF8 FAM156A APEX2 HSD17B10 MIR6895 FAM120C WNK3 SNORA109 MIR4536-2 PAGE2B MIR4536-1 XAGE3 MIRLET7F2 KDM5C TRO ITIH6 PAGE5 RIBC1 MIR6894 FAM156B MIR6857 USP51 SMC1A TSR2 VCF2 TSPYL2 KANTR SNORA11G ALAS2 MAGED2 PAGE2 FGD1 PAGE3 IQSEC2 GPR173 LOC100421746 MIR98

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