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Gene Symbol
CDK11B
Assay Reference Genome
Location

Chr.1:1655181 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03342538_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 984

Gene Name:

 cyclin dependent kinase 11B

Gene Aliases:

 CDC2L1, CDK11, CDK11-p110, CDK11-p46, CDK11-p58, CLK-1, PITSLREA, PK58, p58, p58CDC2L1, p58CLK-1

Location:

 Chr.1:1635226-1659839 on Build GRCh38

Assay Gene Location:

 Within Intron 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CDK11B NM_001291345.1 NP_001278274.1
NM_001787.2 NP_001778.2
NM_033486.2 NP_277021.2
NM_033487.2 NP_277022.1
NM_033489.2 NP_277024.2
NM_033490.2 NP_277025.1
XM_006711065.3 XP_006711128.1
XM_011542490.2 XP_011540792.1
XM_011542491.2 XP_011540793.1
XM_011542492.2 XP_011540794.1
XM_011542493.2 XP_011540795.1
XM_011542494.2 XP_011540796.1
XM_011542495.2 XP_011540797.1
XM_017002925.1 XP_016858414.1
XM_017002926.1 XP_016858415.1
XM_017002927.1 XP_016858416.1
XM_017002928.1 XP_016858417.1
AF067512.1 AAC72077.1
AF067513.1 AAC72078.1
AF067514.1 AAC72079.1
AF067515.1 AAC72080.1
AF067516.1 AAC72081.1
AF067517.1 AAC72082.1
AF174497.1 AAF36538.1
AK000081.1
AK295607.1
AK304679.1
BC009375.2 AAH09375.1
BC104661.1 AAI04662.1
BC139777.1
BC140714.1
BC171773.1
DC295949.1
DC362247.1
DC393302.1
U04816.1 AAA19582.1
U04817.1 AAA19583.1
U04818.1 AAA19584.1
U04824.1 AAA19586.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv5n111 Chr.1:1575421 - 1823403 on Build GRCh38 Deletion CDK11B FNDC10 MMP23A MMP23B NADK GNB1 MIB2 CDK11A SLC35E2 SLC35E2B
dgv8n100 Chr.1:1569349 - 1741152 on Build GRCh38 Loss CDK11B FNDC10 MMP23A SSU72 MMP23B MIB2 CDK11A SLC35E2 SLC35E2B
esv3575582 Chr.1:1624086 - 1721336 on Build GRCh38 Gain CDK11B MMP23A MMP23B MIB2 CDK11A SLC35E2B
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss PRKCZ MMP23B OR4F5 MIR429 NADK ATAD3B SCNN1D LOC100132287 LOC107985729 FAM138A ACAP3 CALML6 ATAD3A CDK11A PLEKHN1 MXRA8 TMEM88B DVL1 PERM1 SKI OR4F16 LOC729737 LOC102724312 LOC284600 B3GALT6 ATAD3C LOC105378589 TTLL10-AS1 TNFRSF4 SAMD11 MIB2 CFAP74 SLC35E2B LINC00115 FNDC10 MIR6808 MRPL20 AGRN TNFRSF18 AURKAIP1 RNF223 LOC107984841 TTLL10 LOC100287934 CDK11B MMP23A MIR6859-2 VWA1 LOC100134822 MIR200B GABRD MIR200A TMEM240 TAS1R3 LOC100129534 DDX11L1 KLHL17 PUSL1 SLC35E2 MTND2P28 ANKRD65 OR4F29 LOC105378948 FAM132A LOC100288175 LOC101928626 LINC01128 MIR6723 SSU72 MIR6727 UBE2J2 MTND1P23 LOC102725121 TMEM52 CPSF3L LOC107985728 LOC105378947 MIR6726 LOC100506504 LINC01342 FAAP20 MIR1302-2 NOC2L FAM41C LOC100288069 CPTP HES4 SDF4 LOC105378949 WASH7P LOC105378592 LOC148413 MORN1 C1orf159 GNB1 CCNL2 LOC100130417 LOC105378591 ISG15 FAM87B LOC100133331 MIR6859-1
nsv1160797 Chr.1:1566216 - 1805918 on Build GRCh38 Duplication CDK11B FNDC10 MMP23A SSU72 MMP23B NADK GNB1 MIB2 CDK11A SLC35E2 SLC35E2B
dgv2e199 Chr.1:1653096 - 1721890 on Build GRCh38 Deletion CDK11B MMP23A CDK11A SLC35E2B
esv2760410 Chr.1:1565561 - 1756248 on Build GRCh38 Gain+Loss CDK11B FNDC10 MMP23A SSU72 MMP23B NADK MIB2 CDK11A SLC35E2 SLC35E2B
nsv545017 Chr.1:1615322 - 1663759 on Build GRCh38 Loss CDK11B MMP23B MIB2 SLC35E2B
esv3585007 Chr.1:1647187 - 1714507 on Build GRCh38 Loss CDK11B MMP23A CDK11A SLC35E2B
esv27786 Chr.1:1632502 - 1752267 on Build GRCh38 Gain CDK11B MMP23A MMP23B NADK CDK11A SLC35E2 SLC35E2B
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MMP23B MIR429 NADK ATAD3B SCNN1D KLHL17 PUSL1 SLC35E2 LOC107985729 ANKRD65 ACAP3 ATAD3A LOC105378948 CDK11A FAM132A PLEKHN1 MXRA8 TMEM88B LOC100288175 LINC01128 DVL1 PERM1 SSU72 MIR6727 LOC102724312 LOC284600 UBE2J2 B3GALT6 ATAD3C TTLL10-AS1 TNFRSF4 CPSF3L SAMD11 MIB2 LOC107985728 SLC35E2B LINC00115 FNDC10 MIR6726 MIR6808 LINC01342 NOC2L FAM41C MRPL20 AGRN LOC100288069 CPTP TNFRSF18 AURKAIP1 RNF223 HES4 SDF4 TTLL10 LOC100287934 CDK11B MMP23A VWA1 LOC148413 MIR200B C1orf159 MIR200A TMEM240 TAS1R3 CCNL2 LOC100130417 ISG15 FAM87B
nsv545018 Chr.1:1638499 - 1688102 on Build GRCh38 Loss CDK11B SLC35E2B
dgv3n67 Chr.1:1653920 - 1735718 on Build GRCh38 Gain CDK11B MMP23A CDK11A SLC35E2 SLC35E2B
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss PRKCZ TMEM52 MMP23B NADK ATAD3B MIB2 CFAP74 SLC35E2 SLC35E2B LOC107985729 FNDC10 ANKRD65 CALML6 ATAD3A CDK11A MRPL20 TMEM88B LOC105378949 CDK11B MMP23A SSU72 VWA1 LOC148413 LOC102724312 GABRD GNB1 TMEM240 CCNL2 LOC105378591 ATAD3C LOC105378589

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More Information


Additional Information:

For this assay, SNP(s) [rs113432402] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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