Name: [Hs03366752_cn] [SSU72]
Creator: Thermo Fisher Scientific
Keywords: [SSU72] Assay, [SSU72 homolog, RNA polymerase II CTD phosphatase] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	29101
Gene Name:	SSU72 homolog, RNA polymerase II CTD phosphatase
Gene Aliases:	HSPC182, PNAS-120
Location:	Chr.1:1541673-1574863 on Build GRCh38
Assay Gene Location:	Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SSU72	NM_014188.3			NP_054907.1
	AF161530.1			AAF29145.1
	AF277178.1			AAK07538.1
	AJ276409.1			CAC81713.1
	AK001809.1			BAA91921.1
	AK129493.1	1	590
	AK297505.1			BAG59918.1
	AK310067.1
	BC008070.2			AAH08070.1

Target Copy Number Variation Details

DGV Version:

Release date: 2025-12-01, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv545000	Chr.1:1421170 - 1573654 on Build GRCh38	Loss	SDHB ATP13A2 VWA1 ATAD3C ATAD3B ANKRD65-AS1 TMEM278 PADI2 LOC107985729 ATAD3A ANKRD65 TMEM240 SSU72 LINC01770
nsv4036425	Chr.1:1559960 - 1579531 on Build GRCh38	Duplication	SSU72-AS1 SSU72
nsv10161	Chr.1:776731 - 1777210 on Build GRCh38	Gain+Loss	ATAD3C LOC440570 MIR200A CDK11B MIR6727 LOC284600 MIR200B FNDC10 RNF223 DVL1 LOC124903857 LOC100288069 SSU72 CROCC VWA1 SLC35E2B MIR6726 ANKRD65-AS1 SAMD11 SDF4 RNU1-4 MST1P2 LINC01770 SDHB ESPNP MIR429 TMEM278 KLHL17 LOC105378586 TTLL10-AS1 TNFRSF18 AKT3-IT1 LOC107985728 MIB2 MRPL20-AS1 MMP23A FAM87B LINC01409 ATAD3B TTLL10 LOC124905564 LINC01786 TNFRSF4 PLEKHN1 SSU72-AS1 LINC00115 ANKRD65 TMEM240 MRPL20-DT INTS11 LOC102724562 SLC35E2A PADI2 SCNN1D LOC100288175 LINC03126 CCNL2 ISG15 TAS1R3 AURKAIP1 LOC107985729 ATAD3A B3GALT6 RNVU1-18 EIF1AXP1 NOC2L AKT3 CROCCP2 LINC01128 CPTP MRPL20 UBE2J2 RNVU1-28 RNU1-3 LOC105376805 AGRN ATP13A2 LINC02593 PERM1 LINC01342 MMP23B HES4 MIR6808 PUSL1 F13B RNU1-2 ACAP3 MXRA8 SNORD167 FAM41C C1orf159 LOC105378948 NADK C1QTNF12 MIR3675 MFAP2 CDK11A NBPF1
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	HAPLN2 ATAD3C OR4F29 CDK11B MIR6727 LOC284600 LOC105373265 MIR200B FNDC10 OR4F16 RNF223 HCN3 DVL1 SPATA21 LOC102724250 HNRNPR BCAN-AS2 IQGAP3 VWA1 MIR6726 ANKRD65-AS1 FCER1A RNA5S5 CALML6 PADI1 SAMD11 SDF4 PDE4DIPP2 PRAMEF33 LOC101928626 MST1P2 CROCCP3 H2BC26 KIF26B PADI3 NBPF26 SDHB ID3 RNA5S12 RNF187 MIR429 RNA5S14 KLHL17 PRAMEF2 OR2T1 LRIG2-DT LOC105378586 TTLL10-AS1 HNRNPCL2 GNB1 PRAMEF5 CFHR5 MIR6859-2 AKT3-IT1 RNA5S16 TTC24 LOC107985728 LINC01347 CFAP74 MIR4735 LINC01772 GBA1LP ARHGEF19 SLC25A24 MTCO1P12 LINC01783 LOC100996583 RNA5S15 SEPTIN14P13 LOC124905564 LINC01786 PLEKHN1 OR10J1 RNA5S1 SLC27A3 LINC00115 OR2T5 RNA5S3 NECAP2 KCNT2 PADI2 LOC100288175 RCC2 FBXO42 RHOU MTND2P28 MIR4666A MIR12136 CCNL2 ISG15 TTC34 LOC107985729 GBA1 ATAD3A RNA5S17 TNFRSF14 NOTCH2NLR RNA5S10 EIF1AXP1 ATP5IF1 PRXL2B AKT3 NBPF8 CFH LOC729737 RPS6KA1 B3GALNT2 PRAMEF8 MTX1 OR4F5 RNA5S8 GPATCH4 RNA5S2 PTPRC-AS1 LOC100132287 PERM1 NBPF4 FOXO6 MMP23B ASAP3 WASH7P BCAN MIR9-1HG OR2G6 PUSL1 MEF2D RNU1-2 PKLR MXRA8 SERTAD4 ZNF496-DT LINC02783 MMEL1-AS1 RNA5S11 TMEM52 OR10J3 C1orf159 CFHR4 CEP170 FAAP20 OR2T4 NADK C1QTNF12 OR2T11 SESN2 MIR3675 PRKCZ LOC105378589 CDK11A NBPF1 MIR1302-2 RNA5S6 HHAT KMT2CP1 RNA5S9 LOC440570 MIR200A TBCE PRAMEF34P MIR3972 ZNF436-AS1 LOC105378947 GATAD2B LOC124903857 DNAJC8 LOC100288069 LOC112268260 OR2T3 SSU72 SLC16A1 OR2T2 DUSP5P1 CROCC RNVU1-7 OR2T7 MORN1 SLC35E2B WASH9P RNVU1-19 SZRD1 LINC02602 NAXE HNRNPCL4 LOC124905558 SDCCAG8 RNA5S4 LOC127239154 CPLANE2 PTPRC AKR7A2P1 RNU1-4 OR2T35 LOC343052 SLC16A1-AS1 ENTREP3 PRAMEF11 PRAMEF18 LINC01770 GABRD ESPNP LOC105376859 FAM138A TMEM278 OR2T29 PRAMEF36P PADI6 RCC2-AS1 TNFRSF18 PRAMEF7 RNU1-1 PPIAL4F PRKCZ-AS1 DDX11L1 LOC101060632 MIB2 MRPL20-AS1 PADI4 MMP23A FAM87B LINC01409 FOXO6-AS1 PRAMEF13 LOC105379522 SERTAD4-AS1 ATAD3B TTLL10 NBPF6 SCAMP3 PFN1P2 PPIAL4A TNFRSF4 ZNF436 SCMH1-DT RNA5S7 H2AC25 SSU72-AS1 ANKRD65 TMEM240 PRKCZ-DT MRPL20-DT OR10J4 NLRP3 OR2T27 INTS11 LOC102724562 SLC35E2A CLK2 MTND1P23 PRAMEF6 H3-4 SCNN1D LINC03126 PRAMEF27 LOC105371215 RNVU1-2A PRAMEF26 HNRNPCL1 TAS1R3 AURKAIP1 TNFRSF14-AS1 MTCO2P12 LOC101928163 B3GALT6 RNVU1-18 MED18 LOC100129534 PRAMEF9 NOC2L MIR1976 PLCH2 TCEA3 CROCCP2 MMEL1 OR14I1 LINC01128 MTCO3P12 PANK4 OR2T34 CPTP PRAMEF4 OR2T6 LOC112268219 HES5 GNB1-DT LOC107985524 MRPL20 GNG4 PRAMEF22 UBE2J2 RNVU1-28 RNU1-3 PRAMEF25 LOC105376805 PRAMEF10 AGRN ATP13A2 LINC02593 MIR4677 MST1L LINC01342 LOC101928177 MIR6859-1 ATP6V1G3 INTS3 HES4 BTNL10P MIR6808 CFHR2 F13B LOC124905320 ACAP3 LINC01355 DDX11L17 SNORD167 VN1R5 MTATP6P1 SKI FAM41C HNRNPCL3 E2F2 ZNF496 LOC105378948 ANO7L1 OR2T10 LINC01719 RNA5S13 MFAP2
nsv950452	Chr.1:1106921 - 1637538 on Build GRCh38	Deletion	ATAD3C MIR200A PADI2 SCNN1D CDK11B LINC03126 MIR6727 MIR200B FNDC10 CCNL2 TAS1R3 AURKAIP1 DVL1 LOC107985729 ATAD3A SSU72 B3GALT6 CROCC VWA1 MIR6726 ANKRD65-AS1 CROCCP2 CPTP SDF4 MRPL20 UBE2J2 RNVU1-28 MST1P2 LINC01770 LOC105376805 SDHB ATP13A2 LINC01342 MMP23B MIR429 TMEM278 MIR6808 PUSL1 LOC105378586 TTLL10-AS1 RNU1-2 TNFRSF18 ACAP3 MXRA8 MIB2 SNORD167 MRPL20-AS1 C1orf159 ATAD3B TTLL10 C1QTNF12 LINC01786 TNFRSF4 MIR3675 SSU72-AS1 MFAP2 ANKRD65 TMEM240 MRPL20-DT NBPF1 INTS11
nsv6331676	Chr.1:1559222 - 1563401 on Build GRCh38	Deletion	SSU72
nsv1011818	Chr.1:1394332 - 1575421 on Build GRCh38	Gain	SDHB ATP13A2 VWA1 ATAD3C ATAD3B ANKRD65-AS1 TMEM278 PADI2 CCNL2 LOC107985729 MRPL20 SSU72-AS1 ATAD3A MFAP2 ANKRD65 TMEM240 SSU72 MRPL20-DT LINC01770 MRPL20-AS1
esv2758913	Chr.1:1389149 - 2092899 on Build GRCh38	Gain+Loss	SDHB SLC35E2A ATP13A2 MMP23B ATAD3C TMEM278 PADI2 CDK11B LOC105378586 FNDC10 CCNL2 GNB1 LOC107985729 ATAD3A SSU72 CFAP74 MIB2 MRPL20-AS1 MMP23A TMEM52 VWA1 SLC35E2B ATAD3B ANKRD65-AS1 CALML6 NADK GNB1-DT MRPL20 PRKCZ SSU72-AS1 MFAP2 ANKRD65 TMEM240 PRKCZ-DT MRPL20-DT LOC105378589 CDK11A LINC01770 GABRD