Name: [Hs03383829_cn] [SSU72]
Creator: Thermo Fisher Scientific
Keywords: [SSU72] Assay, [SSU72 homolog, RNA polymerase II CTD phosphatase] Assay

Genomic Map

LOADING...

×

Back To Top

Assay Details

Target Gene Details

Entrez Gene ID:	29101
Gene Name:	SSU72 homolog, RNA polymerase II CTD phosphatase
Gene Aliases:	HSPC182, PNAS-120
Location:	Chr.1:1541673-1574863 on Build GRCh38
Assay Gene Location:	Within Intron 2

Gene Symbol	Transcript Accession	Protein ID
SSU72	NM_014188.3	NP_054907.1
	AF161530.1	AAF29145.1
	AF277178.1	AAK07538.1
	AJ276409.1	CAC81713.1
	AK001809.1	BAA91921.1
	AK297505.1	BAG59918.1
	AK310067.1
	BC008070.2	AAH08070.1

Target Copy Number Variation Details

DGV Version:

Release date: 2025-12-01, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv545000	Chr.1:1421170 - 1573654 on Build GRCh38	Loss	LINC01770 PADI2 SSU72 SDHB ATAD3C ATAD3A LOC107985729 TMEM240 ANKRD65 ATP13A2 ANKRD65-AS1 ATAD3B TMEM278 VWA1
nsv4036425	Chr.1:1559960 - 1579531 on Build GRCh38	Duplication	SSU72 SSU72-AS1
nsv10161	Chr.1:776731 - 1777210 on Build GRCh38	Gain+Loss	TTLL10 RNVU1-18 LOC100288175 ATAD3C ATAD3A LOC105378586 TMEM240 LOC105376805 AURKAIP1 LINC01128 NADK ATAD3B TNFRSF18 LOC102724562 AKT3 LOC100288069 B3GALT6 LOC440570 CDK11A TNFRSF4 LOC105378948 MRPL20-DT TMEM278 SLC35E2B EIF1AXP1 LOC284600 INTS11 LINC01342 MIR429 CPTP ANKRD65-AS1 MMP23A CDK11B ISG15 SSU72-AS1 TTLL10-AS1 RNVU1-28 MFAP2 DVL1 ESPNP MIR200B ATP13A2 RNF223 MIR3675 LINC01786 SAMD11 LOC124903857 FAM87B MIR6726 RNU1-4 TAS1R3 LINC01409 MIB2 SCNN1D FNDC10 MIR6727 AKT3-IT1 LOC107985728 HES4 SLC35E2A ANKRD65 NBPF1 RNU1-3 MRPL20 CROCCP2 LINC01770 PERM1 C1QTNF12 LINC00115 PADI2 SSU72 SNORD167 LINC02593 F13B SDF4 MXRA8 C1orf159 MST1P2 PLEKHN1 MRPL20-AS1 FAM41C VWA1 UBE2J2 MIR200A LOC124905564 NOC2L PUSL1 SDHB KLHL17 LINC03126 LOC107985729 MIR6808 RNU1-2 AGRN CROCC ACAP3 MMP23B CCNL2
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	OR2T27 OR2T3 RNA5S3 HNRNPCL4 LOC100288175 LOC124905320 SZRD1 RNA5S14 TMEM240 MIR4677 RNA5S1 ZNF436-AS1 LOC729737 AURKAIP1 ENTREP3 LOC100996583 DDX11L17 CROCCP3 SERTAD4-AS1 LOC102724562 KIF26B LOC100288069 PRKCZ-AS1 PRAMEF6 CDK11A TNFRSF4 DDX11L1 SERTAD4 MIR4666A RNA5S4 TMEM278 HNRNPCL2 OR2T10 LOC105379522 CEP170 EIF1AXP1 LOC284600 CFHR2 PRAMEF27 ID3 MEF2D OR10J3 PRAMEF13 PRAMEF34P RNF187 CPTP CFHR5 RNA5S16 HHAT OR2T2 TTC34 PRKCZ NLRP3 NAXE WASH7P ISG15 MTX1 FOXO6 MMEL1-AS1 CALML6 SDCCAG8 FOXO6-AS1 TTLL10-AS1 MIR9-1HG RNVU1-28 MFAP2 RNA5S9 MIR200B IQGAP3 MST1L PRXL2B VN1R5 RNVU1-19 LINC02602 LINC01355 OR2T1 RNA5S17 RNA5S6 MIR3675 LOC105371215 SAMD11 LOC124903857 RNA5S11 MIR1976 MIR6726 RNU1-4 ZNF496 MIR6859-2 LINC01409 MIB2 BTNL10P DUSP5P1 ANO7L1 FNDC10 NOTCH2NLR FAM138A GBA1 ARHGEF19 RNA5S7 E2F2 LINC02783 ZNF496-DT LOC102724250 RPS6KA1 PRAMEF4 OR2T34 OR2T7 PADI4 LRIG2-DT ZNF436 NBPF1 LOC105376859 RNU1-3 B3GALNT2 TCEA3 PRAMEF2 MRPL20 CROCCP2 LINC01770 SLC27A3 PERM1 C1QTNF12 H2BC26 NBPF8 LINC00115 SSU72 PRAMEF26 LOC107985524 TBCE LINC01719 RNA5S2 FAM41C BCAN-AS2 MIR200A LOC124905564 NOC2L MMEL1 AKR7A2P1 PUSL1 RCC2-AS1 ATP6V1G3 SDHB LOC107985729 ASAP3 MIR6808 GATAD2B MORN1 RNU1-2 PDE4DIPP2 DNAJC8 CCNL2 MIR3972 TTLL10 PRAMEF22 RNA5S13 LOC105378947 RNVU1-18 TMEM52 PANK4 ATAD3C ATAD3A LOC105378586 WASH9P MED18 PPIAL4A HNRNPR KCNT2 LOC105376805 SCMH1-DT LINC01128 NADK RNA5S5 ATAD3B PRKCZ-DT LOC101928626 PRAMEF8 PRAMEF18 PRAMEF25 TNFRSF18 SKI OR4F16 PADI3 AKT3 GNB1 OR2T35 CFH B3GALT6 LOC440570 OR4F5 HES5 LOC105378948 RHOU MRPL20-DT SPATA21 OR10J4 GNG4 INTS3 NECAP2 OR2T4 PADI6 OR2T5 SLC35E2B LINC01347 INTS11 LINC01342 NBPF26 TNFRSF14-AS1 MIR429 TNFRSF14 LOC105373265 NBPF6 LOC101060632 ANKRD65-AS1 RCC2 TTC24 CFHR4 MMP23A CDK11B HNRNPCL1 SSU72-AS1 LINC01783 LOC343052 PRAMEF36P LOC127239154 PKLR FCER1A GPATCH4 CFAP74 DVL1 LINC01772 KMT2CP1 ESPNP BCAN NBPF4 ATP13A2 HNRNPCL3 PLCH2 RNF223 SCAMP3 MTATP6P1 RNA5S8 RNA5S12 RNA5S15 HAPLN2 PPIAL4F LOC105378589 MIR1302-2 RNVU1-7 LOC112268219 PRAMEF11 OR14I1 GNB1-DT LINC01786 LOC101928163 SLC16A1-AS1 FAM87B PTPRC-AS1 TAS1R3 RNA5S10 HCN3 SCNN1D H2AC25 MIR6727 MIR12136 AKT3-IT1 LOC124905558 PRAMEF10 RNU1-1 LOC107985728 HES4 OR2G6 SLC35E2A FBXO42 CLK2 ANKRD65 GBA1LP OR4F29 MTCO1P12 OR2T11 SEPTIN14P13 GABRD LOC100132287 OR10J1 RNVU1-2A PFN1P2 PRAMEF7 PADI2 SNORD167 LOC112268260 LINC02593 SESN2 OR2T29 FAAP20 F13B PADI1 ATP5IF1 LOC101928177 SDF4 MXRA8 C1orf159 MIR4735 MST1P2 LOC100129534 PLEKHN1 MRPL20-AS1 MTCO2P12 PTPRC VWA1 UBE2J2 PRAMEF33 OR2T6 CPLANE2 PRAMEF5 MIR6859-1 MTCO3P12 KLHL17 H3-4 LINC03126 SLC25A24 AGRN CROCC ACAP3 MTND1P23 SLC16A1 MTND2P28 MMP23B PRAMEF9
nsv950452	Chr.1:1106921 - 1637538 on Build GRCh38	Deletion	TTLL10 MIR3675 LINC01786 ATAD3C ATAD3A MIR6726 LOC105378586 TAS1R3 TMEM240 MIB2 LOC105376805 SCNN1D AURKAIP1 FNDC10 ATAD3B MIR6727 TNFRSF18 B3GALT6 TNFRSF4 ANKRD65 MRPL20-DT NBPF1 MRPL20 TMEM278 CROCCP2 LINC01770 C1QTNF12 INTS11 LINC01342 PADI2 SSU72 SNORD167 MIR429 CPTP SDF4 MXRA8 ANKRD65-AS1 C1orf159 MST1P2 MRPL20-AS1 CDK11B VWA1 UBE2J2 SSU72-AS1 MIR200A PUSL1 TTLL10-AS1 SDHB RNVU1-28 LINC03126 MFAP2 DVL1 LOC107985729 MIR6808 MIR200B RNU1-2 ATP13A2 CROCC ACAP3 MMP23B CCNL2
nsv6331676	Chr.1:1559222 - 1563401 on Build GRCh38	Deletion	SSU72
nsv1011818	Chr.1:1394332 - 1575421 on Build GRCh38	Gain	LINC01770 PADI2 SSU72 SDHB ATAD3C ATAD3A MFAP2 LOC107985729 TMEM240 ANKRD65 MRPL20-DT ATP13A2 ANKRD65-AS1 MRPL20-AS1 ATAD3B MRPL20 TMEM278 CCNL2 VWA1 SSU72-AS1
esv2758913	Chr.1:1389149 - 2092899 on Build GRCh38	Gain+Loss	LINC01770 LOC105378589 SLC35E2B GNB1-DT TMEM52 PADI2 SSU72 ATAD3C ATAD3A LOC105378586 TMEM240 MIB2 ANKRD65-AS1 NADK PRKCZ MRPL20-AS1 FNDC10 ATAD3B MMP23A CDK11B PRKCZ-DT VWA1 SSU72-AS1 CALML6 GNB1 SDHB CDK11A CFAP74 SLC35E2A MFAP2 LOC107985729 ANKRD65 MRPL20-DT ATP13A2 GABRD MRPL20 MMP23B TMEM278 CCNL2