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See other HLA-DPA1 CNV Assays ›
Gene Symbol
HLA-DPA1
Assay Reference Genome
Location

Chr.6:33075989 on build GRCh38
Cytoband
6p21.32
Assay ID Hs03618933_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 3113

Gene Name:

 major histocompatibility complex, class II, DP alpha 1

Gene Aliases:

 DP(W3), DP(W4), HLA-DP1A, HLADP, HLASB, PLT1

Location:

 Chr.6:33064569-33080778 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HLA-DPA1 NM_001242524.1 NP_001229453.1
NM_001242525.1 NP_001229454.1
BI553587.1
CD516536.1

Target Gene Details

Entrez Gene ID:

 3115

Gene Name:

 major histocompatibility complex, class II, DP beta 1

Gene Aliases:

 DPB1, HLA-DP, HLA-DP1B, HLA-DPB

Location:

 Chr.6:33075926-33089696 on Build GRCh38

Assay Gene Location:

 Within Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HLA-DPB1 NM_002121.5 1 64 NP_002112.3
AB208978.1 BAD92215.1
AK291986.1
AK301322.1
AK303153.1
AK313305.1
AY656678.1 AAV71025.1
AY656679.1 AAV71026.1
AY656680.1 AAV71027.1
AY804132.1 AAW78737.1
AY804133.1 AAW78738.1
AY804134.1 AAW78739.1
AY804135.1 AAW78740.1
AY804136.1 AAW78741.1
AY804137.1 AAW78742.1
AY804138.1 AAW78743.1
AY804139.1 AAW78744.1
AY804140.1 AAW78745.1
AY804141.1 AAW78746.1
AY804142.1 AAW78747.1
AY804143.1 AAW78748.1
AY831401.1 AAW80919.1
AY831402.1 AAW80920.1
AY831403.1 AAW80921.1
AY831404.1 AAW80922.1
BC007963.2 AAH07963.1
BC013184.1 AAH13184.1
BC015000.1 AAH15000.1
BP213121.1 1 64
BT019780.1 AAV38583.1
DQ284441.1 ABC66207.1
FR775797.1
GQ891549.1
HE603611.1
HE603612.1
HE614584.1
HE614585.1
HE614586.1
HE614587.1
HE614588.1
HE614589.1
HE614590.1
HE614591.1
J03041.1 AAA35993.1
KJ780721.1
M28200.1 AAA53195.1
M57466.1 AAA63221.1
M83664.1 AAA59837.1
X01426.1 CAA25672.1
X03067.1 CAA26871.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv823645 Chr.6:33061191 - 33091364 on Build GRCh38 Loss HLA-DPA1 HLA-DPB1
esv2731879 Chr.6:33065144 - 33107309 on Build GRCh38 Deletion HLA-DPA1 HLA-DPB1
nsv1024429 Chr.6:32997190 - 33154554 on Build GRCh38 Loss HLA-DPA1 HLA-DPB1 HLA-DOA HLA-DPB2 HCG24
esv1006913 Chr.6:33064893 - 33088398 on Build GRCh38 Gain HLA-DPA1 HLA-DPB1
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion FKBPL HLA-DQB2 PRRC2A HLA-DRA HLA-DPA1 ATP6V1G2 NCR3 CYP21A2 GPSM3 SNORA38 SNORD48 AGER APOM MICB SKIV2L ZBTB9 MIR219A1 HSD17B8 ZBTB12 RING1 MIR6873 AIF1 EGFL8 SYNGAP1 HLA-DMB RPS18 C6orf10 VARS HLA-DOA GPANK1 VPS52 SLC39A7 LY6G5C NELFE TNXA MIR5004 LST1 MSH5 NFKBIL1 MIR6721 PFDN6 B3GALT4 C6orf47 HLA-DQB1-AS1 LY6G6F ABHD16A SNORD117 STK19 LY6G6D RGL2 HLA-DOB HCG25 EHMT2 SAPCD1-AS1 HCG26 DDAH2 MIR6832 NEU1 HLA-DRB6 MIR1236 MIR4646 MIR6834 PPT2-EGFL8 C2 MIR3135B VWA7 DDX39B LOC100287329 COL11A2 HLA-DQA1 TNXB SNORD84 HLA-DQA2 DXO CSNK2B HSPA1B CUTA LY6G5B HCP5 HLA-DRB5 LOC100294145 BAG6 LY6G6E HCG23 HLA-DPB2 LTB PRRT1 HSPA1L TNF ATF6B PBX2 CFB HSPA1A BRD2 C4A HCG24 C6orf25 PSMB8 HLA-DRB1 LOC100507547 WDR46 KIFC1 LOC101929163 LTA CLIC1 SNORD52 ATP6V1G2-DDX39B MCCD1 PSMB8-AS1 TAP1 LOC102725068 DAXX PPP1R2P1 PPT2 BTNL2 AGPAT1 C6orf48 TAP2 RXRB MSH5-SAPCD1 DDX39B-AS1 NOTCH4 RNF5 PSMB9 HLA-DQB1 TAPBP SAPCD1 MIR6833 C2-AS1 PHF1 C4B ZBTB22 SLC44A4 HLA-DMA CYP21A1P LSM2 HLA-DPB1 LY6G6C
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion FKBPL HLA-DQB2 PRRC2A HLA-DRA HLA-DPA1 ATP6V1G2 NCR3 CYP21A2 GPSM3 SNORA38 SNORD48 AGER APOM MICB SKIV2L ZBTB9 MIR219A1 HSD17B8 ZBTB12 RING1 MIR6873 AIF1 EGFL8 SYNGAP1 HLA-DMB RPS18 C6orf10 VARS HLA-DOA GPANK1 VPS52 SLC39A7 LY6G5C NELFE TNXA MIR5004 LST1 MSH5 NFKBIL1 MIR6721 PFDN6 B3GALT4 C6orf47 HLA-DQB1-AS1 LY6G6F ABHD16A SNORD117 STK19 LY6G6D RGL2 HLA-DOB HCG25 EHMT2 SAPCD1-AS1 HCG26 DDAH2 MIR6832 NEU1 HLA-DRB6 MIR1236 MIR4646 MIR6834 PPT2-EGFL8 C2 MIR3135B VWA7 DDX39B LOC100287329 COL11A2 HLA-DQA1 TNXB SNORD84 HLA-DQA2 DXO CSNK2B HSPA1B CUTA LY6G5B HCP5 HLA-DRB5 LOC100294145 BAG6 LY6G6E HCG23 HLA-DPB2 LTB PRRT1 HSPA1L TNF ATF6B PBX2 CFB HSPA1A BRD2 C4A HCG24 C6orf25 PSMB8 HLA-DRB1 LOC100507547 WDR46 KIFC1 LOC101929163 LTA CLIC1 SNORD52 ATP6V1G2-DDX39B MCCD1 PSMB8-AS1 TAP1 LOC102725068 DAXX PPP1R2P1 PPT2 BTNL2 AGPAT1 C6orf48 TAP2 RXRB MSH5-SAPCD1 DDX39B-AS1 NOTCH4 RNF5 PSMB9 HLA-DQB1 TAPBP SAPCD1 MIR6833 C2-AS1 PHF1 C4B ZBTB22 SLC44A4 HLA-DMA CYP21A1P LSM2 HLA-DPB1 LY6G6C
esv22467 Chr.6:33055021 - 33087568 on Build GRCh38 Loss HLA-DPA1 HLA-DPB1
nsv602818 Chr.6:32998165 - 33150041 on Build GRCh38 Loss HLA-DPA1 HLA-DPB1 HLA-DOA HLA-DPB2 HCG24
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion WDR46 RPS18 KIFC1 MIR3135B HLA-DOA PSMB8-AS1 HLA-DQB2 TAP1 VPS52 SLC39A7 COL11A2 HLA-DQA1 DAXX PPP1R2P1 HLA-DPA1 MIR5004 TAP2 RXRB HLA-DQA2 PFDN6 B3GALT4 PSMB9 HLA-DQB1 CUTA TAPBP LOC100294145 HLA-DQB1-AS1 HLA-DPB2 PHF1 ZBTB9 RGL2 ZBTB22 HLA-DOB HCG25 MIR219A1 HSD17B8 HLA-DMA HLA-DPB1 BRD2 HCG24 RING1 MIR6873 SYNGAP1 MIR6834 PSMB8 HLA-DMB

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