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See other RUNX1 CNV Assays ›
Gene Symbol
RUNX1
Assay Reference Genome
Location

Chr.21:34807905 on build GRCh38
Cytoband
Assay ID Hs05537310_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 861

Gene Name:

 RUNX family transcription factor 1

Gene Aliases:

 AML1, AML1-EVI-1, AMLCR1, CBF2alpha, CBFA2, EVI-1, PEBP2aB, PEBP2alpha

Location:

 Chr.21:34787801-35049302 on Build GRCh38

Assay Gene Location:

 Within Intron 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RUNX1 NM_001001890.3 NP_001001890.1
NM_001754.5 NP_001745.2
XM_005261068.4 XP_005261125.1
XM_005261069.5 XP_005261126.1
XM_011529766.3 XP_011528068.1
XM_011529767.3 XP_011528069.1
XM_011529768.3 XP_011528070.1
XM_047441007.1 XP_047296963.1
XM_047441009.1 XP_047296965.1
XM_047441010.1 XP_047296966.1
XM_047441011.1 XP_047296967.1
XM_047441012.1 XP_047296968.1
XM_047441013.1 XP_047296969.1
XM_047441014.1 XP_047296970.1
XM_047441015.1 XP_047296971.1
AK226159.1
BC110828.1 AAI10829.1
BC136380.1 AAI36381.1
BC136381.1 AAI36382.1
BC144053.1 AAI44054.1
D43968.1 BAA07903.1
D43969.1 BAA07904.1
D89788.1 BAA14020.1
D89789.1 BAA14021.1
D89790.1 BAA14022.1
L34598.1 AAA51720.1
S60998.1
S76350.1 AAB33731.1
X79549.1 CAA56092.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2025-12-01, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv5550749 Chr.21:34567808 - 34891808 on Build GRCh38 Duplication RUNX1 LINC01426 LINC00160 CLIC6 RUNX1-AS1 RCAN1
nsv5539790 Chr.21:5227438 - 39583816 on Build GRCh38 Insertion MAP3K7CL DSCR9 LOC105379514 APP TMEM50B LINC00161 C21orf91 MIR99A MIR548XHG KRTAP22-1 LOC105372762 PPP1R2P2 MEMO1P1 LOC105372753 CLDN17 CFAP298-TCP10L GRIK1-AS3 LOC105369308 LINC01423 RNA18SN3 ETS2-AS1 CRYZL1 KRTAP20-4 TMPRSS15 KRTAP6-3 VPS26C TTC3 RNA28SN1 KCNE2 LOC105379504 LINC01666 KRTAP21-2 RNA18SN1 ANKRD30BP2 ERG SON CHODL GET1-SH3BGR CLDN14 KRTAP8-1 ANKRD20A11P KRTAP6-2 SH3BGR LOC102724354 RNA45SN3 LOC110091777 MIR6724-4 LOC124905050 LINC01436 LOC107987288 KRTAP11-1 MIR802 LINC00515 RNA5-8SN3 RUNX1 LINC00314 BACH1-IT2 CBR1 LOC102724843 MIR3156-3 LINC00317 MRAP-AS1 LINC01695 OLIG2 MIS18A KCNE1 KCNJ6-AS1 TTC3-AS1 KRTAP7-1 C21orf140 CLIC6 IFNAR2-IL10RB KRTAP19-4 KRTAP26-1 LINC02920 KRTAP21-1 LINC00160 IFNAR1 BACH1-IT3 PSMG1 NCAM2 LINC01692 LINC02943 GRIK1-AS1 LINC01687 LOC101928107 LINC01700 MIR6501 LINC00307 BTG3 SAMSN1 LOC102724652 MIR3648-2 KRTAP6-1 IGHV1OR21-1 OLIG1 KRTAP19-6 MIRLET7C MIR6724-2 CBR3 SOD1 USP25 RUNX1-AS1 RNA45SN1 USP16 LINC01673 KRTAP19-7 RNA5-8SN2 LOC102723475 EVA1C BRWD1-AS2 KRTAP13-3 LINC01697 MIR4327 LOC102723553 LTN1 SIM2 LINC01684 RCAN1 GABPA GRIK1-AS2 MIR6724-3 TEKT4P2 HEMK2 ADAMTS5 IFNGR2 LOC101930100 LINC01683 LINC01689 ITSN1 CH507-42P11.6 KRTAP13-4 KRTAP25-1 RNA45SN2 LOC101928269 ADAMTS1 LOC124905049 SMIM11 KRTAP20-2 MIR4759 SETD4 POTED C21orf91-OT1 CYP4F29P MIR8069 LOC105372793 DSCR8 KRTAP22-2 CXADR URB1 SLC5A3 LINC00158 SOD1-DT LOC100506403 RIPPLY3 DYRK1A RNA28SN2 SMIM34 CFAP298 KCNJ6 LOC102723451 ETS2 CYYR1-AS1 MRAP LINC03104 NCOR1P4 DSCR10 MIR10396A DSCR4 CCT8 BACH1 LINC00320 GART RUNX1-IT1 MORC3 MIR6130 BRWD1-AS1 PAXBP1 MIS18A-AS1 KRTAP19-3 CBR3-AS1 SETD4-AS1 LOC102724560 MIR10396B RNA5-8SN1 LINC01690 MIR3118-1 MRPL39 ATP5PO HLCS-AS1 EPCIP-AS1 MIR6724-1 IL10RB-DT LINC00310 MIR125B2 SAMSN1-AS1 LINC00189 LINC00114 BAGE2 SYNJ1 GET1 D21S2088E RNA18SN2 PAXBP1-AS1 KRTAP19-5 CLDN8 LINC00308 LOC101928398 HMGN1 KRTAP19-2 LINC00159 LOC101927745 RBM11 PIGP MIR155HG KRTAP13-2 CYYR1 LOC102723360 TIAM1-AS1 KRTAP13-1 SNORD74B DONSON MIR548X IL10RB KRTAP19-8 KRTAP19-1 LINC01549 LOC105372791 MRPS6 LINC00113 LOC106780825 TPTE SNORA80A CBR1-AS1 TIAM1 APP-DT LINC01674 TCP10L LOC102724594 JAM2 EPCIP HUNK LINC01667 ASMER1 ATP5PF MIR8069-1 CLDN14-AS1 DOP1B MIR99AHG RNA28SN3 MIR3648-1 RWDD2B KRTAP21-3 LCA5L SCAF4 BRWD1 LINC01548 KRTAP15-1 LINC01425 IFNAR2 KRTAP20-3 LOC107983987 KRTAP23-1 NRIP1 LINC00945 MIR155 LINC00649 MIR6508 LOC105377134 LINC03147 KRTAP24-1 HSPA13 LOC105379499 ABCC13 LOC105369306 LOC110091776 KRTAP20-1 URB1-AS1 LOC101927345 LOC102724428 BTG3-AS1 KCNJ15 CHAF1B LINC02573 LINC01426 LIPI LOC101928126 HLCS RPL23P2 DNAJC28 LOC102724334 GRIK1 LOC100288590 LINC03105 KRTAP27-1

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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