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See other RUNX1 CNV Assays ›
Gene Symbol
RUNX1
Assay Reference Genome
Location

Chr.21:34797244 on build GRCh38
Cytoband
Assay ID Hs05551226_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 861

Gene Name:

 RUNX family transcription factor 1

Gene Aliases:

 AML1, AML1-EVI-1, AMLCR1, CBF2alpha, CBFA2, EVI-1, PEBP2aB, PEBP2alpha

Location:

 Chr.21:34787801-35049302 on Build GRCh38

Assay Gene Location:

 Within Intron 9
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RUNX1 NM_001001890.3 NP_001001890.1
NM_001754.5 NP_001745.2
XM_005261068.4 XP_005261125.1
XM_005261069.5 XP_005261126.1
XM_011529766.3 XP_011528068.1
XM_011529767.3 XP_011528069.1
XM_011529768.3 XP_011528070.1
XM_047441007.1 XP_047296963.1
XM_047441009.1 XP_047296965.1
XM_047441010.1 XP_047296966.1
XM_047441011.1 XP_047296967.1
XM_047441012.1 XP_047296968.1
XM_047441013.1 XP_047296969.1
XM_047441014.1 XP_047296970.1
XM_047441015.1 XP_047296971.1
AK226159.1
AL581043.3
BC136380.1 AAI36381.1
BC136381.1 AAI36382.1
BC144053.1 AAI44054.1
D43968.1 BAA07903.1
D43969.1 BAA07904.1
D89788.1 BAA14020.1
D89789.1 BAA14021.1
D89790.1 BAA14022.1
L34598.1 AAA51720.1
X79549.1 CAA56092.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2025-12-01, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv5550749 Chr.21:34567808 - 34891808 on Build GRCh38 Duplication RUNX1-AS1 LINC01426 LINC00160 CLIC6 RCAN1 RUNX1
nsv5539790 Chr.21:5227438 - 39583816 on Build GRCh38 Insertion KRTAP21-3 MIR10396A MIR6724-2 LINC00160 KRTAP8-1 CLDN17 LOC102723360 KRTAP13-3 KRTAP11-1 LOC107983987 GET1 USP16 MIS18A APP IL10RB KRTAP21-1 LINC00320 TIAM1-AS1 OLIG2 LOC102724354 GRIK1-AS1 MEMO1P1 KRTAP6-1 SMIM11 MIR4327 MIR155HG RPL23P2 LINC01423 C21orf140 LOC105379504 KRTAP25-1 ETS2 CYYR1 ERG ITSN1 MRAP EPCIP LOC105369306 LOC107987288 RNA28SN1 BRWD1-AS2 IFNAR2 LINC01425 KRTAP19-2 TPTE LINC00189 LINC02573 LINC00158 LOC102724428 SETD4-AS1 GRIK1 C21orf91 MIR548XHG BRWD1 CBR1-AS1 KRTAP19-5 LINC01673 LOC105377134 IFNAR1 BTG3 RNA45SN3 KRTAP6-3 DYRK1A SCAF4 IL10RB-DT CBR3 LINC00649 LINC01667 KCNE1 SOD1 RNA45SN1 MIR8069 LINC00314 MIR8069-1 TMPRSS15 HEMK2 LOC110091777 SNORA80A MIR99AHG LOC102723553 CLIC6 APP-DT LINC01666 RNA18SN1 ADAMTS1 LINC01700 LINC01436 LOC102724843 ATP5PF HMGN1 ANKRD20A11P SNORD74B KRTAP27-1 USP25 MIR125B2 KCNJ6-AS1 CBR1 MIR6508 CLDN14-AS1 SMIM34 IGHV1OR21-1 RNA45SN2 DSCR8 LINC03104 IFNAR2-IL10RB CBR3-AS1 LINC03105 LINC00515 NCAM2 ADAMTS5 ABCC13 NRIP1 MIR3118-1 OLIG1 LINC01687 LINC00317 SAMSN1 LINC01697 LINC01695 SON KRTAP7-1 SAMSN1-AS1 GRIK1-AS2 MIR6724-1 EVA1C LINC02920 KCNJ15 DSCR10 LINC00114 URB1 ASMER1 RBM11 LOC110091776 MRAP-AS1 MORC3 LINC01426 LINC00159 LOC101927345 KRTAP23-1 DOP1B RCAN1 LINC00307 BACH1 MIR99A DONSON LOC101928269 D21S2088E RNA5-8SN2 LINC01692 KRTAP13-1 MRPS6 CHODL LOC101930100 POTED CYYR1-AS1 TEKT4P2 LOC105372791 RUNX1-AS1 LINC00945 MIR6130 RNA28SN2 MRPL39 DSCR4 LOC106780825 LOC105379514 KRTAP20-1 RNA18SN3 ANKRD30BP2 RWDD2B LOC105379499 EPCIP-AS1 LOC101927745 LOC102723475 CH507-42P11.6 LOC102723451 LOC124905049 TTC3 LINC01548 KCNE2 JAM2 DSCR9 PAXBP1-AS1 KRTAP19-7 MIR155 SIM2 RUNX1 SETD4 GET1-SH3BGR MAP3K7CL LOC102724652 KRTAP6-2 KCNJ6 LOC100506403 RUNX1-IT1 RNA18SN2 LCA5L LOC101928107 CRYZL1 BACH1-IT2 TCP10L TTC3-AS1 LINC03147 KRTAP19-8 ETS2-AS1 MIR548X MIS18A-AS1 LOC102724594 NCOR1P4 RNA5-8SN1 KRTAP13-2 RNA5-8SN3 LOC105372753 LINC01689 LOC102724334 KRTAP20-2 KRTAP22-2 LOC100288590 RIPPLY3 KRTAP22-1 LOC105369308 MIR802 SH3BGR CXADR KRTAP24-1 LINC00308 LINC01690 LINC01549 BAGE2 LOC101928398 PSMG1 LOC105372793 CLDN14 MIR6501 CFAP298-TCP10L KRTAP15-1 KRTAP20-3 SOD1-DT SLC5A3 RNA28SN3 MIR3156-3 VPS26C MIRLET7C PIGP GABPA DNAJC28 LOC124905050 KRTAP19-6 MIR6724-4 TMEM50B KRTAP20-4 HLCS BRWD1-AS1 PPP1R2P2 CHAF1B LINC01674 HLCS-AS1 KRTAP19-1 GART LOC102724560 CLDN8 KRTAP19-4 LINC02943 LOC105372762 MIR4759 KRTAP19-3 LINC00113 LINC00161 C21orf91-OT1 PAXBP1 TIAM1 KRTAP13-4 CFAP298 MIR3648-1 HUNK LINC01683 BTG3-AS1 BACH1-IT3 CCT8 LINC00310 MIR6724-3 LOC101928126 LINC01684 LTN1 SYNJ1 ATP5PO GRIK1-AS3 MIR3648-2 MIR10396B KRTAP21-2 URB1-AS1 CYP4F29P KRTAP26-1 IFNGR2 LIPI HSPA13

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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