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See other SMARCB1 CNV Assays ›
Gene Symbol
SMARCB1
Assay Reference Genome
Location

Chr.22:23787687 on build GRCh38
Cytoband
22q11.23
Assay ID Hs05562880_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 6598

Gene Name:

 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1

Gene Aliases:

 BAF47, CSS3, INI1, MRD15, PPP1R144, RDT, RTPS1, SNF5, SNF5L1, SWNTS1, Sfh1p, Snr1, hSNFS

Location:

 Chr.22:23786931-23834518 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SMARCB1 NM_001007468.2 NP_001007469.1
NM_001317946.1 NP_001304875.1
NM_003073.4 NP_003064.2
XM_011530345.2 XP_011528647.1
AB017523.1 BAC77068.1
AJ011737.1 CAA09758.1
AJ011738.1 CAA09759.1
AK021419.1
AK024025.1 BAB14784.1
AK299411.1
AK303620.1
AL389878.1
AU143041.1
BC117114.1
BC143667.1
BG705851.1
CR456581.1 CAG30467.1
HY013730.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv8039n54 Chr.22:23323169 - 24601506 on Build GRCh38 Gain PCAT14 ZDHHC8P1 MIF ADORA2A-AS1 GUCD1 DDTL SPECC1L CES5AP1 SMARCB1 SNRPD3 LRRC75B GSTTP1 DERL3 LOC388882 POM121L9P DDT C22orf15 ADORA2A LOC100652871 RGL4 ZNF70 VPREB3 GGT1 MIF-AS1 LOC101929374 GUSBP11 SLC2A11 DRICH1 UPB1 SUSD2 GSTT2 GGT5 MMP11 LOC107985559 LOC107985555 CABIN1 GSTT2B CHCHD10 SPECC1L-ADORA2A IGLL1
esv3893461 Chr.22:23509514 - 23995877 on Build GRCh38 Gain PCAT14 LOC100652871 RGL4 ZNF70 VPREB3 MIF-AS1 MIF GUSBP11 SLC2A11 DRICH1 DDTL GSTT2 MMP11 SMARCB1 LOC107985559 GSTT2B DERL3 CHCHD10 DDT C22orf15 IGLL1
nsv526567 Chr.22:23348138 - 24600663 on Build GRCh38 Gain PCAT14 ZDHHC8P1 MIF ADORA2A-AS1 GUCD1 DDTL SPECC1L CES5AP1 SMARCB1 SNRPD3 LRRC75B GSTTP1 DERL3 LOC388882 POM121L9P DDT C22orf15 ADORA2A LOC100652871 RGL4 ZNF70 VPREB3 GGT1 MIF-AS1 LOC101929374 GUSBP11 SLC2A11 DRICH1 UPB1 SUSD2 GSTT2 GGT5 MMP11 LOC107985559 LOC107985555 CABIN1 GSTT2B CHCHD10 SPECC1L-ADORA2A IGLL1
esv2724041 Chr.22:23315914 - 24669376 on Build GRCh38 Deletion PCAT14 ZDHHC8P1 MIF ADORA2A-AS1 POM121L10P GUCD1 DDTL SPECC1L CES5AP1 SMARCB1 SNRPD3 LRRC75B GSTTP1 DERL3 LOC388882 BCRP3 POM121L9P DDT C22orf15 ADORA2A LOC100652871 RGL4 ZNF70 VPREB3 GGT1 MIF-AS1 LOC101929374 GUSBP11 SLC2A11 DRICH1 UPB1 SUSD2 GSTT2 GGT5 MMP11 LOC107985559 LOC107985555 CABIN1 GSTT2B BCR CHCHD10 SPECC1L-ADORA2A IGLL1
nsv1062411 Chr.22:23407914 - 23922609 on Build GRCh38 Gain PCAT14 RGL4 ZNF70 VPREB3 MIF-AS1 MIF LOC101929374 GUSBP11 SLC2A11 DRICH1 MMP11 SMARCB1 DERL3 CHCHD10 LOC388882 C22orf15 IGLL1
dgv4528n100 Chr.22:23322244 - 24682765 on Build GRCh38 Gain PCAT14 ZDHHC8P1 MIF ADORA2A-AS1 POM121L10P GUCD1 DDTL SPECC1L CES5AP1 SMARCB1 SNRPD3 LRRC75B GSTTP1 DERL3 LOC388882 BCRP3 POM121L9P DDT C22orf15 ADORA2A LOC100652871 RGL4 ZNF70 VPREB3 GGT1 MIF-AS1 LOC101929374 GUSBP11 SLC2A11 DRICH1 UPB1 SUSD2 GSTT2 GGT5 MMP11 LOC107985559 LOC107985555 CABIN1 GSTT2B CHCHD10 SPECC1L-ADORA2A IGLL1
esv3893457 Chr.22:22657560 - 23995877 on Build GRCh38 Gain PCAT14 ZDHHC8P1 MIF DDTL IGLV4-3 MIR5571 CES5AP1 SMARCB1 IGLV3-19 IGLV3-21 IGLJ3 DERL3 LOC388882 DDT C22orf15 IGLL5 LOC100652871 RGL4 ZNF70 VPREB3 MIF-AS1 LOC101929374 GUSBP11 SLC2A11 RSPH14 MIR650 DRICH1 IGLC1 GSTT2 GNAZ MMP11 LOC107985559 LOC107985555 GSTT2B BCR CHCHD10 RAB36 IGLV2-5 IGLV3-25 FBXW4P1 IGLL1
nsv1066891 Chr.22:22611045 - 24001082 on Build GRCh38 Gain PCAT14 ZDHHC8P1 MIF DDTL IGLV4-3 MIR5571 CES5AP1 SMARCB1 IGLV3-19 IGLV3-21 IGLJ3 GSTTP1 DERL3 LOC388882 DDT C22orf15 IGLL5 LOC100652871 RGL4 POM121L1P ZNF70 VPREB3 MIF-AS1 LOC101929374 GUSBP11 SLC2A11 RSPH14 MIR650 DRICH1 GGTLC2 IGLC1 GSTT2 GNAZ MMP11 LOC107985559 LOC107985555 GSTT2B BCR CHCHD10 RAB36 IGLV2-5 IGLV3-25 FBXW4P1 IGLL1
esv3575443 Chr.22:23348201 - 24670505 on Build GRCh38 Gain PCAT14 ZDHHC8P1 MIF ADORA2A-AS1 POM121L10P GUCD1 DDTL SPECC1L CES5AP1 SMARCB1 SNRPD3 LRRC75B GSTTP1 DERL3 LOC388882 BCRP3 POM121L9P DDT C22orf15 ADORA2A LOC100652871 RGL4 ZNF70 VPREB3 GGT1 MIF-AS1 LOC101929374 GUSBP11 SLC2A11 DRICH1 UPB1 SUSD2 GSTT2 GGT5 MMP11 LOC107985559 LOC107985555 CABIN1 GSTT2B CHCHD10 SPECC1L-ADORA2A IGLL1

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

DNA metabolism protein

Gene Ontology Categories:

Function(s) Process(es)


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