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- Gene Symbol:
-
Nanog - Gene Name:
- Nanog homeobox
- Gene Aliases:
- 2410002E02Rik, ENK, ecat4
- Chromosome Location:
- Chr.6: 122706483 - 122714633 on Build GRCm38
- Species:
- Mouse
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Nanog | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_001289828.1 | NP_001276757.1 | 4 | 1977 | 145 | |
| NM_001289830.1 | NP_001276759.1 | 5 | 1777 | 145 | ||
| NM_001289831.1 | NP_001276760.1 | 5 | 1761 | 145 | ||
| NM_028016.3 | NP_082292.1 | 4 | 1980 | 145 | ||
| GenBank mRNA | AB093574.1 | - | 4 | 1951 | 145 | |
| AF507043.1 | - | 4 | 1952 | 145 | ||
| AK010332.1 | - | 4 | 1952 | 145 | ||
| AK167259.1 | - | 4 | 1952 | 145 | ||
| AY278951.1 | - | 4 | 1829 | 145 | ||
| AY455282.1 | - | 5 | 1761 | 145 | ||
| AY455285.1 | - | 5 | 1777 | 145 | ||
| BC083105.1 | - | 1 | 860 | 145 | ||
| BY382803.1 | - | 1 | 195 | 145 | ||
Back To TopMore Information
Additional Information:
Based on assay re-evaluation, this assay may detect genomic DNA. Please contact Tech Support if you need more information.
Set Membership: |
Amplicon length greater than or equal to 101
3' Most
Mammalian Gene Collection
Detect Genomic DNA
Recommended Assay
Mus musculus
Mouse Stem Cell Pluripotency
Inventoried
Mouse_Stem_Cell
Both primers and probe map within a single exon
|
Panther Classification:
Gene Ontology Categories:
Function(s)
Process(es)
negative regulation of transcription from RNA polymerase II promoter
mesodermal cell fate commitment
endodermal cell fate specification
transcription, DNA-templated
regulation of transcription, DNA-templated
multicellular organism development
cell proliferation
positive regulation of cell proliferation
embryo development
response to organic substance
negative regulation of cell fate commitment
regulation of gene expression
stem cell division
stem cell population maintenance
negative regulation of BMP signaling pathway
response to retinoic acid
somatic stem cell population maintenance
negative regulation of endodermal cell fate specification
regulation of cell differentiation
negative regulation of cell differentiation
positive regulation of transcription, DNA-templated
positive regulation of mitotic cell cycle
positive regulation of transcription from RNA polymerase II promoter
stem cell differentiation
enhancer sequence-specific DNA binding
DNA binding
chromatin binding
transcription factor activity, sequence-specific DNA binding
transcription corepressor activity
protein binding
sequence-specific DNA binding
transcription regulatory region DNA binding
negative regulation of transcription from RNA polymerase II promoter
mesodermal cell fate commitment
endodermal cell fate specification
transcription, DNA-templated
regulation of transcription, DNA-templated
multicellular organism development
cell proliferation
positive regulation of cell proliferation
embryo development
response to organic substance
negative regulation of cell fate commitment
regulation of gene expression
stem cell division
stem cell population maintenance
negative regulation of BMP signaling pathway
response to retinoic acid
somatic stem cell population maintenance
negative regulation of endodermal cell fate specification
regulation of cell differentiation
negative regulation of cell differentiation
positive regulation of transcription, DNA-templated
positive regulation of mitotic cell cycle
positive regulation of transcription from RNA polymerase II promoter
stem cell differentiation
enhancer sequence-specific DNA binding
DNA binding
chromatin binding
transcription factor activity, sequence-specific DNA binding
transcription corepressor activity
protein binding
sequence-specific DNA binding
transcription regulatory region DNA binding
MicroArray Probes:
Agilent
Affymetrix
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Mouse Genome Microarray 4x44K v2 | A_55_P2007699 | BC083105.1 | mouse_transcriptome |
| Agilent Whole Mouse Genome Microarray 4x44K v2 | A_55_P2007699 | BC132017.1 | mouse_transcriptome |
| Agilent Whole Mouse Genome Microarray 4x44K v2 | A_55_P2007699 | BC137873.1 | mouse_transcriptome |
| Agilent Whole Mouse Genome Microarray 4x44K v2 | A_55_P2007699 | BC144995.1 | mouse_transcriptome |
| Agilent Whole Mouse Genome Microarray 4x44K v2 | A_55_P2007699 | BC144996.1 | mouse_transcriptome |
| Agilent Whole Mouse Genome Microarray 4x44K v2 | A_55_P2007708 | BC083105.1 | mouse_transcriptome |
| Agilent Whole Mouse Genome Microarray 4x44K v2 | A_55_P2007708 | AY455282.1 | mouse_transcriptome |
| Agilent Whole Mouse Genome Microarray 4x44K v2 | A_55_P2007708 | AY455285.1 | mouse_transcriptome |
| Agilent Whole Mouse Genome Microarray 4x44K v2 | A_55_P2007708 | AY278951.1 | mouse_transcriptome |
| Agilent Whole Mouse Genome Microarray 4x44K v2 | A_55_P2007708 | AF507043.1 | mouse_transcriptome |
| Agilent SurePrint G3 Mouse CGH Microarray 1x1M | 1930 | - | - |
| Agilent SurePrint G3 Mouse CGH Microarray 1x1M | 281346 | - | - |
| Agilent SurePrint G3 Mouse CGH Microarray 1x1M | 689313 | - | - |
| Agilent SurePrint G3 Mouse CGH Microarray 1x1M | 441151 | - | - |
| Agilent SurePrint G3 Mouse CGH Microarray 4x180K | 24438 | - | - |
| Agilent Mouse Genome CGH Microarray 44K G4426B | A_53_P117005 | - | - |
| Agilent Mouse Genome CGH Microarray 44K G4426B | A_53_P118325 | - | - |
| Agilent Mouse Genome CGH Microarray 44K G4426B | A_53_P108259 | - | - |
| SurePrint G3 Mouse Gene Expression Microarray G4852A | A_55_P2007708 | BC083105.1 | mouse_transcriptome |
| SurePrint G3 Mouse Gene Expression Microarray G4852A | A_55_P2007708 | AY455282.1 | mouse_transcriptome |
| SurePrint G3 Mouse Gene Expression Microarray G4852A | A_55_P2007708 | AY455285.1 | mouse_transcriptome |
| SurePrint G3 Mouse Gene Expression Microarray G4852A | A_55_P2007708 | AY278951.1 | mouse_transcriptome |
| SurePrint G3 Mouse Gene Expression Microarray G4852A | A_55_P2007708 | AF507043.1 | mouse_transcriptome |
| SurePrint G3 Mouse Gene Expression Microarray G4852A | A_55_P2007699 | BC083105.1 | mouse_transcriptome |
| SurePrint G3 Mouse Gene Expression Microarray G4852A | A_55_P2007699 | BC132017.1 | mouse_transcriptome |
| SurePrint G3 Mouse Gene Expression Microarray G4852A | A_55_P2007699 | BC137873.1 | mouse_transcriptome |
| SurePrint G3 Mouse Gene Expression Microarray G4852A | A_55_P2007699 | BC144995.1 | mouse_transcriptome |
| SurePrint G3 Mouse Gene Expression Microarray G4852A | A_55_P2007699 | BC144996.1 | mouse_transcriptome |
| Agilent Genotypic Technology designed "Custom Agilent Mus Musculus 8x15k GE Microarray (AMADID-016270) " | A_51_P294233 | BC083105.1 | mouse_transcriptome |
| Agilent Genotypic Technology designed "Custom Agilent Mus Musculus 8x15k GE Microarray (AMADID-016270) " | A_51_P294233 | AY455282.1 | mouse_transcriptome |
| Agilent Genotypic Technology designed "Custom Agilent Mus Musculus 8x15k GE Microarray (AMADID-016270) " | A_51_P294233 | AY455285.1 | mouse_transcriptome |
| Agilent Genotypic Technology designed "Custom Agilent Mus Musculus 8x15k GE Microarray (AMADID-016270) " | A_51_P294233 | AY278951.1 | mouse_transcriptome |
| Agilent Genotypic Technology designed "Custom Agilent Mus Musculus 8x15k GE Microarray (AMADID-016270) " | A_51_P294233 | AF507043.1 | mouse_transcriptome |
| Agilent Mouse Genome CGH Microarray 244A (G4415A) | A_53_P118325 | - | - |
| Agilent Mouse Genome CGH Microarray 244A (G4415A) | A_53_P117005 | - | - |
| Agilent Mouse Genome CGH Microarray 244A (G4415A) | A_53_P108259 | - | - |
| Whole Mouse Genome G4122A | A_51_P294233 | BC083105.1 | mouse_transcriptome |
| Whole Mouse Genome G4122A | A_51_P294233 | AY455282.1 | mouse_transcriptome |
| Whole Mouse Genome G4122A | A_51_P294233 | AY455285.1 | mouse_transcriptome |
| Whole Mouse Genome G4122A | A_51_P294233 | AY278951.1 | mouse_transcriptome |
| Whole Mouse Genome G4122A | A_51_P294233 | AF507043.1 | mouse_transcriptome |
| Agilent Mouse Genome CGH Microarray 105A (G4416A) | A_53_P117005 | - | - |
| Agilent Mouse Genome CGH Microarray 105A (G4416A) | A_53_P108259 | - | - |
| Agilent Mouse Genome CGH Microarray 105A (G4416A) | A_53_P118325 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24810000 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24810064 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24810054 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24809986 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24809990 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24810072 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24809979 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24810068 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24809982 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24809984 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24809995 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24810007 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24810009 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24810060 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24810006 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24810067 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24809998 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24810062 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24809997 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24810057 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24810073 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24809992 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24810005 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24809988 | - | - |
| Agilent Mouse Whole Genome ChIP-on-Chip | A_68_P24810069 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P24810005 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P24809980 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P05216783 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P05870067 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P24809977 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P24809983 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P24809990 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P24809986 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P24810007 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P24809984 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P24810054 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P05775053 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P24809992 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P24809979 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P24809997 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P24809998 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P24809988 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P24810000 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P05528493 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P24810006 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P05656119 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P05216784 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P24809995 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P24810004 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P24809981 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P24810009 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P24809976 | - | - |
| Agilent Six_ChIP_02_of_03_v2 | A_68_P24809982 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Mouse Gene 1.0 ST Array | 10541528 | - | - |
| Affymetrix Mouse Gene 1.0 ST Array | 10541527 | - | - |
| Affymetrix Mouse Gene 1.0 ST Array | 10541525 | - | - |
| Affymetrix Mouse Gene 1.0 ST Array | 10541530 | - | - |
| Affymetrix Mouse Gene 1.0 ST Array | 10541529 | - | - |
| Affymetrix Mouse Gene 1.0 ST Array | 10541526 | - | - |
| Affymetrix Mouse Gene 1.0 ST Array | 10541531 | - | - |
| Affymetrix HT MG-430 PM Array Plate | 1429388_PM_at | - | - |
| Affymetrix Mouse Gene 1.1 ST Array | 10541524 | - | - |
| Mouse Genome 430 2.0 Array | 1429388_at | - | - |
| Mouse Genome 430 2.0 Array | 1429388_PM_at | - | - |
| Affymetrix GeneChip Mouse Genome 430 2.0 Array | 71950_PM_at | - | - |
| Affymetrix GeneChip Mouse Genome 430 2.0 Array | 71950_at | - | - |
| Affymetrix Mouse Clariom S Array | PSR0600011203.mm.1 | TC0600001391.mm.1 | MTA TC |
| Affymetrix Mouse Clariom S Array | PSR0600011203.mm.1 | NM_001289828.1 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011203.mm.1 | NM_028016.3 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011205.mm.1 | TC0600001391.mm.1 | MTA TC |
| Affymetrix Mouse Clariom S Array | PSR0600011205.mm.1 | NM_001289828.1 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011205.mm.1 | NM_001289830.1 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011205.mm.1 | NM_001289831.1 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011205.mm.1 | NM_028016.3 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011204.mm.1 | TC0600001391.mm.1 | MTA TC |
| Affymetrix Mouse Clariom S Array | PSR0600011204.mm.1 | NM_001289828.1 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011204.mm.1 | NM_001289830.1 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011204.mm.1 | NM_001289831.1 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011204.mm.1 | NM_028016.3 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011202.mm.1 | TC0600001391.mm.1 | MTA TC |
| Affymetrix Mouse Clariom S Array | PSR0600011202.mm.1 | NM_001289828.1 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011202.mm.1 | NM_001289830.1 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011202.mm.1 | NM_028016.3 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011208.mm.1 | TC0600001391.mm.1 | MTA TC |
| Affymetrix Mouse Clariom S Array | PSR0600011208.mm.1 | NM_001289828.1 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011208.mm.1 | NM_001289830.1 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011208.mm.1 | NM_001289831.1 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011208.mm.1 | NM_028016.3 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011206.mm.1 | TC0600001391.mm.1 | MTA TC |
| Affymetrix Mouse Clariom S Array | PSR0600011206.mm.1 | NM_001289828.1 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011206.mm.1 | NM_001289830.1 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011206.mm.1 | NM_001289831.1 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011206.mm.1 | NM_028016.3 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011209.mm.1 | TC0600001391.mm.1 | MTA TC |
| Affymetrix Mouse Clariom S Array | PSR0600011209.mm.1 | NM_001289828.1 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011209.mm.1 | NM_001289830.1 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011209.mm.1 | NM_001289831.1 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011209.mm.1 | NM_028016.3 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR0600011200.mm.1 | TC0600001391.mm.1 | MTA TC |
| Affymetrix Mouse Clariom S Array | PSR0600011200.mm.1 | NM_001289831.1 | Refseq |
| Mouse Expression Set 430 | 1429388_PM_at | - | - |
| Mouse Expression Set 430 | 1429388_at | - | - |
| Murine Genome U74v2 Set | 161653_PM_f_at | - | - |
| Murine Genome U74v2 Set | 161072_PM_at | - | - |
| Murine Genome U74v2 Set | 161072_at | - | - |
| Murine Genome U74v2 Set | 161653_f_at | - | - |
| Mouse Genome 430A 2.0 Array | 1429388_at | - | - |
| Mouse Genome 430A 2.0 Array | 1429388_PM_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| MouseWG-6 v2 Expression BeadChip | 3140114 | - | - |
| Illumina mouseRef-8 v1.1 expression beadchip | ILMN_2706623 | - | - |
| Illumina mouseRef-8 v1.1 expression beadchip | ILMN_1245732 | - | - |
| Illumina mouseRef-8 v1.1 expression beadchip | ILMN_1235710 | - | - |
| Illumina mouse-6 v1.1 expression beadchip | ILMN_1235710 | - | - |
| Illumina mouse-6 v1.1 expression beadchip | ILMN_1245732 | - | - |
| Illumina mouse-6 v1.1 expression beadchip | ILMN_2706623 | - | - |
| MouseRef-8 v2 Expression BeadChip | ILMN_2706623 | - | - |
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