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          • Home
          • › Search Tool
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          • › Rn00562516_m1
          See other FOXA1 GE Assays ›
          Gene Symbol:
          Foxa1
          Gene Name:
          forkhead box A1
          Gene Aliases:
          Hnf3a
          Chromosome Location:
          Chr.6: 78516579 - 78549669 on Build Rnor_6.0
          Species:
          Rat
          Species Specific ID (Flybase ID):
          -
          Assay ID Rn00562516_m1
          Best Coverage
          Size
          Availability Inventoried
          Catalog # 4331182
          Price 284.00
          Your Price
          Online offer: 266.65
          266.65
          Check your price ›
          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Foxa1
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_012742.1 NP_036874.1 1 - 2 126 65
          GenBank mRNA X55955.1 - 1 - 2 126 65

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          More Information


          Updated Mapping Information

          This assay targets the same location as RTA transcript cluster(s) TC0600002519.rn.1

          Set Membership:

          Ambion siRNA available Amplicon length less than or equal to 70 Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

          Matching Ambion siRNAs:

          Click here to find siRNAs for Gene Foxa1

          Panther Classification:

          Molecular Function -

          winged helix/forkhead transcription factor

          Gene Ontology Categories:

          Function(s) Process(es)

          negative regulation of transcription from RNA polymerase II promoter
          chromatin remodeling
          transcription, DNA-templated
          multicellular organism development
          regulation of gene expression
          negative regulation of epithelial to mesenchymal transition
          chromatin modification
          dorsal/ventral neural tube patterning
          lung development
          response to estradiol
          positive regulation of intracellular estrogen receptor signaling pathway
          tube morphogenesis
          hormone metabolic process
          glucose homeostasis
          positive regulation of neuron differentiation
          positive regulation of smoothened signaling pathway
          positive regulation of mitotic cell cycle
          positive regulation of transcription from RNA polymerase II promoter
          anatomical structure formation involved in morphogenesis
          neuron fate specification
          positive regulation of sequence-specific DNA binding transcription factor activity
          regulation of cell cycle
          epithelial tube branching involved in lung morphogenesis
          lung epithelial cell differentiation
          secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development
          epithelial-mesenchymal signaling involved in prostate gland development
          prostate gland epithelium morphogenesis
          prostate gland stromal morphogenesis
          epithelial cell maturation involved in prostate gland development
          connective tissue development
          transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
          transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
          DNA binding
          double-stranded DNA binding
          transcription factor activity, sequence-specific DNA binding
          transcription factor binding
          protein domain specific binding
          sequence-specific DNA binding
          transcription regulatory region DNA binding

          MicroArray Probes:

          Agilent Affymetrix ABI Illumina

          Array Name Probe IDs Targets Target Type
          Agilent Whole Rat Genome Microarray 4x44K v2 A_44_P193083 - -
          Agilent Whole Rat Genome Microarray 4x44K v2 A_64_P074436 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 238668 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 120706 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 861227 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 588677 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 212832 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 428399 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 920746 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 911123 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 494001 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 614363 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 796362 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 16623 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 123073 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 522842 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 670177 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 647147 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 712393 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 879873 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 49334 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 316236 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 201230 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 682627 - -
          Agilent SurePrint G3 Rat CGH Microarray 4x180K 33582 - -
          Agilent SurePrint G3 Rat CGH Microarray 4x180K 66728 - -
          Agilent SurePrint G3 Rat CGH Microarray 4x180K 68849 - -
          Agilent SurePrint G3 Rat CGH Microarray 4x180K 87084 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P193083 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P074436 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P193083 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P074436 - -
          Agilent SurePrint G3 Rat GE 8x60K Microarray A_64_P074436 - -
          Agilent SurePrint G3 Rat GE 8x60K Microarray A_44_P193083 - -
          SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P193083 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 36550 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 862 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 101803 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 6856 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 70268 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 89399 - -
          Array Name Probe IDs Targets Target Type
          Affymetrix Rat Gene 1.0 ST Array 10890105 - -
          Affymetrix Rat Gene 1.0 ST Array 10890104 - -
          Affymetrix Rat Gene 1.0 ST Array 10890103 - -
          Affymetrix Rat Gene 1.1 ST Array 10890102 - -
          Rat Genome 230 2.0 Array 1369834_PM_at - -
          Rat Genome 230 2.0 Array 1369834_at - -
          Affymetrix HT Rat Focus Array 1369834_PM_at - -
          Affymetrix HT Rat Focus Array 1369834_at - -
          Affymetrix Rat Clariom S Assay PSR0600017906.rn.1 TC0600002519.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0600017908.rn.1 TC0600002519.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0600017907.rn.1 TC0600002519.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0600017897.rn.1 TC0600002519.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0600017902.rn.1 TC0600002519.rn.1 RTA TC
          Rat Expression Set 230 1369834_at - -
          Rat Expression Set 230 1369834_PM_at - -
          Affymetrix Rat Gene 1.0 ST Array 10890102 - -
          Rat Genome U34 Set X55955_at - -
          Array Name Probe IDs Targets Target Type
          ABI Rat Genome Survey Microarray 20716786 - -
          Array Name Probe IDs Targets Target Type
          Illumina ratRef-12 v1.0 expression beadchip ILMN_1366646 - -
          RatRef-12 Expression BeadChip ILMN_49468 - -

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