Assay Details

Gene Family ID:

MIPF0000107, MIR398

Mature miRNA Sequence:

UGUGUUCUCAGGUCACCCCUU

Mature miRNA Details:

Species	miRBase ID	miRBase Accession Number
Arabidopsis	ath-miR398a-3p	MIMAT0000948
Aquilegia caerulea	aqc-miR398a	MIMAT0012578
Arabidopsis lyrata	aly-miR398a-3p	MIMAT0017566
Brassica oleracea	bol-miR398a-3p	MIMAT0010174
Citrus sinensis	csi-miR398a-3p	MIMAT0014079
Cucumis melo	cme-miR398b	MIMAT0026149
View More Rows
Glycine max	gma-miR398a	MIMAT0001689
Glycine max	gma-miR398b-3p	MIMAT0001690
Gossypium hirsutum	ghr-miR398	MIMAT0014337
Gossypium raimondii	gra-miR398	MIMAT0014328
Malus domestica	mdm-miR398a	MIMAT0025998
Medicago truncatula	mtr-miR398a-3p	MIMAT0011085
Populus trichocarpa	ptc-miR398a	MIMAT0002041
Rice	osa-miR398a	MIMAT0000982
Ricinus communis	rco-miR398a	MIMAT0014194
Theobroma cacao	tcc-miR398b	MIMAT0020434
Vitis vinifera	vvi-miR398a	MIMAT0005727

Stem-loop Details

Arabidopsis

Aquilegia caerulea

Arabidopsis lyrata

Brassica oleracea

Citrus sinensis

Cucumis melo

Glycine max

Gossypium hirsutum

Gossypium raimondii

Malus domestica

Medicago truncatula

Populus trichocarpa

Rice

Ricinus communis

Theobroma cacao

Vitis vinifera

More Information

miRBase Alias:

Arabidopsis thaliana: ath-miR398a (v20)
Arabidopsis lyrata: aly-miR398a (v18)
Brassica oleracea: bol-miR398a (v18)
Citrus sinensis: csi-miR398 (v21)
Glycine max: gma-miR398b (v21)
Medicago truncatula: mtr-miR398a (v18)

Assay Name:	ath-miR398a
miRBase Accession Number:	MI0001017
miRBase Version:	v22.1
Chromosome Location:	Chr.2: 1040938 - 1041042 [+] on Build TAIR10.1
Mature miRNA Sequence:	UGUGUUCUCAGGUCACCCCUU
Species:	Arabidopsis, Aquilegia caerulea, Arabidopsis lyrata, Brassica oleracea, Citrus sinensis, Cucumis melo, Glycine max, Gossypium hirsutum, Gossypium raimondii, Malus domestica, Medicago truncatula, Populus trichocarpa, Rice, Ricinus communis, Theobroma cacao, Vitis vinifera
Product Type:	TaqMan^™ MicroRNA Assay

Availability	Made To Order
Catalog #	4440886
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Stem-loop ID	ath-MIR398a
Stem-loop Accession #	MI0001017
Stem-loop Sequence	UGAAAUUUCAAAGGAGUGGCAUGUGAACACAUAUCCUAUGGUUUCUUCAAAUUUCCAUUGAAACCAUUGAGUUUUGUGUUCUCAGGUCACCCCUUUGAAUCUCCC
Chromosome Location	Chr. 2 - 1040938 - 1041042 [+] on Build TAIR10.1
Mature MicroRNA	miRBase Accession #: MIMAT0000948 miRBase ID: ath-miR398a-3p Mature miRNA Sequence: UGUGUUCUCAGGUCACCCCUU Chromosome Location: Chr. 2 - 1040938 - 1041042 [+] on Build TAIR10.1

Stem-loop ID	aqc-MIR398a
Stem-loop Accession #	MI0012096
Stem-loop Sequence	CCUGGAGGAGUGGCACUAAGAACACAGGUGGUUGUGCGAUUUCGAAUAUCAUUGCAUUUUGCAUUUGUGUUCUCAGGUCACCCCUUUGGGGA
Chromosome Location	-
Mature MicroRNA	miRBase Accession #: MIMAT0012578 miRBase ID: aqc-miR398a Mature miRNA Sequence: UGUGUUCUCAGGUCACCCCUU Chromosome Location: NA

Stem-loop ID	aly-MIR398a
Stem-loop Accession #	MI0014585
Stem-loop Sequence	UAAUCAGUGGAAGUAAAGUAUGAAGAAAAAGAGAAGAACAACAGGAGGUGAAAUCUCAAAGGAGUGUCAUGAGAACACAGAUCCUAUGGUUUCUUUACAUUUUCAUUGAAACCAUUGAGUUUGUGUUCUCAGGUCACCCCUUUGAAUCUCCCCUGUUCCUUUAUUUUACCUUACCAAAAUUA
Chromosome Location	-
Mature MicroRNA	miRBase Accession #: MIMAT0017566 miRBase ID: aly-miR398a-3p Mature miRNA Sequence: UGUGUUCUCAGGUCACCCCUU Chromosome Location: NA

System Message

Genomic Map