18 Sep 2019

How to Batch Process an Image Recipe on a Set of 2D Images with Amira-Avizo2D

Example of a batch file to perform batch processing on a set of porous silicon SEM images.


With this batch processing, the recipe detects pores on each image and produces measures, merged in a unique csv file.

Open the .a2d batch file in an editor to observe its format. It sets the following:

  • Input path : ./images
  • Recipe: poroussilicon.hxisp
  • Measure group: Particles/Pores Analysis
  • Output path : ./out

Double-click on the .a2d file to execute the batch processing in Amira-Avizo2D.

This example relies on the pore detection recipe for porous silicon Xtra.