New
Amira-Avizo Software Revamped Documentation
Demo
1 Aug 2024 - This short video provides an overview of the changes we have made to improve the accessibility of the documentation for the Amira and Avizo Software. Learn more
Segmentation+ Workroom Tutorial
Demo
2 May 2024 - Discover the Segmentation+ workroom, a powerful tool for interactive 3D image segmentation. This tutorial offers a comprehensive overview of the segmentation process, covering essential principles and tools. Learn more
How to Use the Arithmetic Module
Demo
2 Jan 2024 - This series of video tutorials introduces the Arithmetic module and examples of use cases. Learn more
Trabecular Segmentation Workflow for Murine Tibial Bone
Recipe (hxrecipe), Project (hx, pgo), Demo, Data
11 Dec 2023 - Here we provide a workflow to easily obtain the segmentation of trabecular bones. Learn more
Visualize Identified Molecules of a Cryo-Tomogram
Python (pyscro), Project (hx, pgo)
4 Dec 2023 - This Xtra provides the means to import results from template matching and visualize them with the Molecule Cloud View module. In addition, a module is provided to crop point clouds according to an ROI-box. Learn more
Python (pyscro)
11 Sep 2023 - A set of four templates to create rapid and efficient visualization of your data Learn more
Python (pyscro)
6 Mar 2023 - A module to enter and execute Python code from Amira-Avizo Software interface. Learn more
AI Assisted Tool for CryoEM Segmentation
Demo, Data
28 Nov 2022 - Here we provide a tutorial to interactively segment a cellular cryo-electron tomography image using the AI assisted segmentation tool of the Segmentation+ workroom. Learn more
Python (pyscro)
17 Nov 2022 - This module allows you to run a given recipe while varying a chosen parameter value of any of the modules making up the recipe. Learn more
Tcl
18 Oct 2022 - This Xtra arranges all materials of a surface in a grid view. Learn more
XPand module
8 Sep 2022 - This Xtra provides a module that evaluates a scalar field at each point of a Spatial Graph and stores the result as the thickness attribute of the resulting Spatial Graph. Learn more
Volume Operations: Flip, Swap, Auto-Crop, and Enlarge
XPand module
8 Sep 2022 - This Xtra contains a set of modules that allow you to perform and automate volume operations on your data. Learn more
XPand module
1 Sep 2022 - The Xtra module extracts single objects based on label information listed in a Label Analysis. Learn more
Reconstruct Spatial Graph from Markers
XPand module
1 Sep 2022 - This Xtra filters a Spatial Graph to keep only segments that have at least one point in each of the labels of an input Label Field. Learn more
Divide Full Data Volume into Defined Sub-Volume Blocks for Label Analysis
Recipe (hxrecipe), Project (hx, pgo), Demo
1 Sep 2022 - This Xtra demonstrates how to use the Arithmetic module to divide a whole volume data into defined sub-volume blocks and then perform label analysis on the blocks. Learn more
How to Install the Deep Learning Python Environment
Python (pyscro), Demo, Misc
29 Jul 2022 - Two videos explain how to install the dependencies needed to use Deep Learning within Amira 3D, Avizo 3D, or Pergeos. One covers the standard install and the other is for users without an internet connection. Learn more
How to Calculate Surface Area of a Custom ROI
Demo, Data
29 Jul 2022 - This tutorial elaborates how to draw a region of interest on a surface. With this ROI, you can calculate its surface area. Learn more
Demo
29 Jul 2022 - Three approaches are shown for extracting a surface and measuring the surface area of its geometry. Learn more
Plane Tools - Surface and Volume Distance to Plane and Spatial Graph Projection onto Plane
XPand module
26 Jul 2022 - This Xtra provides a set of three modules to compute distance and projection to a user-defined plane. Learn more
Xtras Installer for Amira-Avizo 2023.1 and Prior
Recipe (hxrecipe), Recipe ISP, IVP, A2D, Deep learning model, Python (pyscro), Tcl, XPand module, Project (hx, pgo), Template, Demo, Data, Misc
30 Jun 2022 - The Xtras Installer is a tool that provides an easy way to install resources from the Xtra Library on to your local machine. Learn more
Python (pyscro)
10 Jun 2022 - This module merges together a set of several 2D/3D images into one single volume. It is very helpful for building a 2D image stack from a set of 2D images for ground truth definition. Learn more