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See other TCF25 CNV Assays ›
Gene Symbol
TCF25
Assay Reference Genome
Location

Chr.16:89909032 on build GRCh38
Cytoband
16q24.3
Assay ID Hs05464958_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 22980

Gene Name:

 transcription factor 25

Gene Aliases:

 FKSG26, Hulp1, NULP1, PRO2620, hKIAA1049

Location:

 Chr.16:89873583-89911384 on Build GRCh38

Assay Gene Location:

 Within Exon 19
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TCF25 NM_014972.2 NP_055787.1
XM_005256297.2 17 1942 XP_005256354.1
XM_005256298.2 17 1942 XP_005256355.1
XM_005256299.2 17 1897 XP_005256356.1
XM_011522956.2 17 1957 XP_011521258.1
XM_011522957.2 17 1957 XP_011521259.1
XM_011522958.2 17 1912 XP_011521260.1
XM_011522959.2 16 1891 XP_011521261.1
XM_011522960.2 XP_011521262.1
XM_011522961.2 18 2126 XP_011521263.1
XM_017023047.1 16 1876 XP_016878536.1
XM_017023048.1 17 1897 XP_016878537.1
XM_017023049.1 XP_016878538.1
XM_017023050.1 XP_016878539.1
XM_017023051.1 XP_016878540.1
XM_017023052.1 XP_016878541.1
XM_017023053.1 18 2564 XP_016878542.1
XM_017023054.1 18 2111 XP_016878543.1
XM_017023055.1 18 2066 XP_016878544.1
XM_017023056.1 XP_016878545.1
XM_017023057.1 XP_016878546.1
XM_017023058.1 XP_016878547.1
AB028972.1 BAA83001.1
AF130092.1 14 1450 AAG35518.1
AF322111.1 AAG50276.1
AK095785.1
BC000959.1 AAH00959.1
BC009349.2 AAH09349.1
BC011884.2 AAH11884.1
DQ321703.1 ABC55265.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1071318 Chr.16:89907291 - 89909292 on Build GRCh38 Deletion TCF25
nsv526347 Chr.16:89905937 - 89913086 on Build GRCh38 Loss TCF25
nsv573813 Chr.16:89906008 - 89909816 on Build GRCh38 Gain TCF25
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss LOC107987238 LOC101927817 MVD LOC101927793 LOC100129697 LINC00304 SPG7 TUBB3 LOC105371409 PRDM7 AFG3L1P IL17C LOC339059 GAS8-AS1 CDT1 DBNDD1 MC1R ZNF778 MIR4722 SPATA33 SNAI3-AS1 SNORD68 TCF25 RNF166 CTU2 URAHP TRAPPC2L APRT SPATA2L SLC22A31 CENPBD1 CDK10 GALNS LOC107984817 FAM157C CBFA2T3 TUBB8P7 VPS9D1 CHMP1A CYBA SPIRE2 LOC105371414 RPL13 LOC400558 ANKRD11 SNAI3 PABPN1L ZNF276 GAS8 CPNE7 ACSF3 FANCA PIEZO1 DEF8 DPEP1 LOC100287036 CDH15 LOC100289580 LOC105371419 VPS9D1-AS1
nsv457624 Chr.16:89738447 - 89915950 on Build GRCh38 Loss TCF25 FANCA ZNF276 LOC107984817 LOC105371419 SPIRE2
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss CENPBD1 GAS8-AS1 CDK10 ZNF276 LOC107984817 DBNDD1 GAS8 MC1R SPATA33 VPS9D1 TCF25 FANCA CHMP1A DEF8 DPEP1 SPATA2L TUBB3 AFG3L1P LOC105371419 SPIRE2 VPS9D1-AS1
nsv573810 Chr.16:89857498 - 90037251 on Build GRCh38 Loss TCF25 DEF8 CENPBD1 GAS8-AS1 DBNDD1 GAS8 MC1R TUBB3 AFG3L1P SPIRE2
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss CENPBD1 CDK10 LOC101927817 LOC107984817 FAM157C TUBB8P7 VPS9D1 CHMP1A SPG7 TUBB3 PRDM7 AFG3L1P SPIRE2 LOC105371414 RPL13 ANKRD11 GAS8-AS1 ZNF276 DBNDD1 GAS8 MC1R CPNE7 ZNF778 SPATA33 SNORD68 TCF25 FANCA DEF8 URAHP DPEP1 SPATA2L LOC100287036 LOC105371419 VPS9D1-AS1
nsv573799 Chr.16:89852186 - 90022379 on Build GRCh38 Gain TCF25 DEF8 CENPBD1 DBNDD1 GAS8 MC1R TUBB3 AFG3L1P LOC105371419 SPIRE2
nsv573825 Chr.16:89907493 - 89909816 on Build GRCh38 Gain TCF25
nsv511563 Chr.16:89904112 - 89909088 on Build GRCh38 Loss TCF25
nsv509640 Chr.16:89899749 - 89969797 on Build GRCh38 Insertion TCF25 DEF8 CENPBD1 MC1R TUBB3
nsv1066499 Chr.16:89891957 - 90028891 on Build GRCh38 Loss TCF25 DEF8 CENPBD1 DBNDD1 GAS8 MC1R TUBB3 AFG3L1P

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More Information


Additional Information:

For this assay, SNP(s) [rs72813437] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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