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- Gene Symbol:
-
Abca1 - Gene Name:
- ATP-binding cassette, subfamily A (ABC1), member 1
- Gene Aliases:
- -
- Chromosome Location:
- Chr.5: 69857717 - 69983036 on Build Rnor_6.0
- Species:
- Rat
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Abca1 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_178095.2 | NP_835196.1 | 2 - 3 | 239 | 76 | |
| XM_008763708.1 | XP_008761930.1 | 5 - 6 | 822 | 76 | ||
| XM_008763709.1 | XP_008761931.1 | 5 - 6 | 822 | 76 | ||
| XM_008763710.1 | XP_008761932.1 | 5 - 6 | 821 | 76 | ||
| GenBank mRNA | AY208182.1 | - | 2 - 3 | 239 | 76 | |
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC0500002749.rn.1Set Membership: |
Ambion siRNA available
Amplicon length between 71 and 85
Transporter
Recommended Assay
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Matching Ambion siRNAs:
Panther Classification:
Gene Ontology Categories:
Function(s)
Process(es)
peptide secretion
protein lipidation
phagocytosis, engulfment
lysosome organization
G-protein coupled receptor signaling pathway
response to nutrient
cholesterol metabolic process
positive regulation of cholesterol efflux
phospholipid transport
endosomal transport
cholesterol transport
positive regulation of cAMP biosynthetic process
intracellular cholesterol transport
regulation of Cdc42 protein signal transduction
cholesterol efflux
phospholipid efflux
ion transmembrane transport
high-density lipoprotein particle assembly
response to laminar fluid shear stress
apolipoprotein A-I-mediated signaling pathway
lipoprotein metabolic process
lipoprotein biosynthetic process
response to drug
cholesterol homeostasis
reverse cholesterol transport
phospholipid translocation
interleukin-1 beta secretion
transmembrane transport
phospholipid homeostasis
response to low-density lipoprotein particle
response to high density lipoprotein particle
platelet dense granule organization
cellular response to lipopolysaccharide
cellular response to retinoic acid
cellular response to cholesterol
anion transmembrane transport
receptor binding
ATP binding
phospholipid transporter activity
anion transmembrane transporter activity
cholesterol transporter activity
syntaxin binding
small GTPase binding
apolipoprotein binding
apolipoprotein A-I binding
apolipoprotein A-I receptor activity
ATPase activity, coupled to transmembrane movement of substances
ATPase binding
peptide secretion
protein lipidation
phagocytosis, engulfment
lysosome organization
G-protein coupled receptor signaling pathway
response to nutrient
cholesterol metabolic process
positive regulation of cholesterol efflux
phospholipid transport
endosomal transport
cholesterol transport
positive regulation of cAMP biosynthetic process
intracellular cholesterol transport
regulation of Cdc42 protein signal transduction
cholesterol efflux
phospholipid efflux
ion transmembrane transport
high-density lipoprotein particle assembly
response to laminar fluid shear stress
apolipoprotein A-I-mediated signaling pathway
lipoprotein metabolic process
lipoprotein biosynthetic process
response to drug
cholesterol homeostasis
reverse cholesterol transport
phospholipid translocation
interleukin-1 beta secretion
transmembrane transport
phospholipid homeostasis
response to low-density lipoprotein particle
response to high density lipoprotein particle
platelet dense granule organization
cellular response to lipopolysaccharide
cellular response to retinoic acid
cellular response to cholesterol
anion transmembrane transport
receptor binding
ATP binding
phospholipid transporter activity
anion transmembrane transporter activity
cholesterol transporter activity
syntaxin binding
small GTPase binding
apolipoprotein binding
apolipoprotein A-I binding
apolipoprotein A-I receptor activity
ATPase activity, coupled to transmembrane movement of substances
ATPase binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_44_P323106 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 293549 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 474376 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 174317 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 709869 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 502017 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 149842 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 19305 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 425799 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 457960 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 554049 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 741490 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 629274 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 108744 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 717166 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 695915 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 210714 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 447296 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 24487 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 238607 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 295358 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 911533 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 298883 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 99219 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 882734 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 77472 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 831851 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 27102 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 653774 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 136609 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 575659 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 962167 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 957788 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 155076 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 24435 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 537515 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 843847 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 35124 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 201881 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 458982 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 806313 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 93036 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 870523 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 616133 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 326957 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 94276 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 793529 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 893827 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 818474 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 304947 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 895593 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 597523 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 257012 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 927312 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 757794 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 843603 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 209222 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 112304 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 782165 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 22606 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 381592 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 452736 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 54787 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 755782 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 322914 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 672952 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 602357 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 34114 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 201160 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 930414 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 12626 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 759370 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 544901 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 412562 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 657912 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 196489 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 22235 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 166263 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 10215 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 122655 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 57923 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 158265 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 72488 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 95797 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 165187 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 117650 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 179299 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 28361 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P323106 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P323106 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_44_P323106 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P323106 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 43747 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 10208 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 97844 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 52397 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 24121 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 68963 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 21745 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 45985 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10876792 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876806 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876794 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876777 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876788 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876780 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876793 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876800 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876772 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876773 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876790 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876811 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876779 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876786 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876813 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876816 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876784 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876810 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876798 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876783 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876805 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876803 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876789 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876785 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876808 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876787 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876804 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876801 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876774 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876797 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876778 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876799 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876795 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876791 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876814 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876815 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876812 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876781 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876802 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876796 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876770 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876771 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876782 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10876769 | - | - |
| Rat Genome 230 2.0 Array | 1383355_at | - | - |
| Rat Genome 230 2.0 Array | 1394490_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1394490_at | - | - |
| Rat Genome 230 2.0 Array | 1383355_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1384381_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1384381_at | - | - |
| Affymetrix HT Rat Focus Array | 1383355_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1384381_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1383355_at | - | - |
| Affymetrix HT Rat Focus Array | 1384381_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR0500020459.rn.1 | TC0500002749.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0500020460.rn.1 | TC0500002749.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0500020461.rn.1 | TC0500002749.rn.1 | RTA TC |
| Rat Expression Set 230 | 1384381_at | - | - |
| Rat Expression Set 230 | 1383355_at | - | - |
| Rat Expression Set 230 | 1384381_PM_at | - | - |
| Rat Expression Set 230 | 1394490_at | - | - |
| Rat Expression Set 230 | 1383355_PM_at | - | - |
| Rat Expression Set 230 | 1394490_PM_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10876769 | - | - |
| Rat Genome U34 Set | rc_AA964962_at | - | - |
| Rat Genome U34 Set | rc_AI171534_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 21095557 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1650701 | - | - |
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