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          • Home
          • › Search Tool
          • › Search Results
          • › Rn04341321_m1
          See other OTX1 GE Assays ›
          Gene Symbol:
          Otx1
          Gene Name:
          orthodenticle homeobox 1
          Gene Aliases:
          OTX1X
          Chromosome Location:
          Chr.14: 106861556 - 106864933 on Build Rnor_6.0
          Species:
          Rat
          Species Specific ID (Flybase ID):
          -
          Assay ID Rn04341321_m1
          Best Coverage
          Size
          Availability Inventoried
          Catalog # 4331182
          Price
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          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Otx1
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_013109.2 NP_037241.1 1 - 2 143 72
          GenBank mRNA FQ212299.1 - 347 72
          L32602.1 - 1 - 2 144 72

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          More Information


          Updated Mapping Information

          This assay targets the same location as RTA transcript cluster(s) TC1400002344.rn.1

          Set Membership:

          Ambion siRNA available Amplicon length between 71 and 85 3' Most Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

          Matching Ambion siRNAs:

          Click here to find siRNAs for Gene Otx1

          Panther Classification:

          Molecular Function -

          homeodomain transcription factor

          Gene Ontology Categories:

          Function(s) Process(es)

          regulation of transcription, DNA-templated
          regulation of transcription from RNA polymerase II promoter
          multicellular organism development
          anterior/posterior pattern specification
          metencephalon development
          forebrain development
          midbrain development
          inner ear morphogenesis
          positive regulation of transcription from RNA polymerase II promoter
          diencephalon morphogenesis
          RNA polymerase II core promoter proximal region sequence-specific DNA binding
          transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
          transcription factor activity, sequence-specific DNA binding
          sequence-specific DNA binding

          MicroArray Probes:

          Agilent Affymetrix ABI Illumina

          Array Name Probe IDs Targets Target Type
          Agilent Whole Rat Genome Microarray 4x44K v2 A_64_P023788 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 125259 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 418308 - -
          Agilent SurePrint G3 Rat CGH Microarray 4x180K 155221 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P023788 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P023788 - -
          Agilent SurePrint G3 Rat GE 8x60K Microarray A_64_P023788 - -
          SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P496315 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 45032 - -
          Array Name Probe IDs Targets Target Type
          Affymetrix Rat Gene 1.0 ST Array 10778678 - -
          Affymetrix Rat Gene 1.0 ST Array 10778680 - -
          Affymetrix Rat Gene 1.0 ST Array 10778679 - -
          Affymetrix Rat Gene 1.0 ST Array 10778681 - -
          Affymetrix Rat Gene 1.0 ST Array 10778682 - -
          Affymetrix Rat Gene 1.1 ST Array 10778677 - -
          Rat Genome 230 2.0 Array 1387478_at - -
          Rat Genome 230 2.0 Array 1387478_PM_at - -
          Affymetrix HT Rat Focus Array 1387478_at - -
          Affymetrix HT Rat Focus Array 1387478_PM_at - -
          Affymetrix Rat Clariom S Assay PSR1400017357.rn.1 TC1400002344.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR1400017358.rn.1 TC1400002344.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR1400017359.rn.1 TC1400002344.rn.1 RTA TC
          Rat Expression Set 230 1387478_at - -
          Rat Expression Set 230 1387478_PM_at - -
          Affymetrix Rat Gene 1.0 ST Array 10778677 - -
          Rat Genome U34 Set S81924_s_at - -
          Rat Genome U34 Set L32602_at - -
          Rat Genome U34 Set rc_AI072009_at - -
          Array Name Probe IDs Targets Target Type
          ABI Rat Genome Survey Microarray 20859901 - -
          Array Name Probe IDs Targets Target Type
          Illumina ratRef-12 v1.0 expression beadchip ILMN_1362584 - -
          RatRef-12 Expression BeadChip ILMN_59771 - -

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