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          • Home
          • › Search Tool
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          • › C__58662585_20
          See other HLA-DQA1 GT Assays ›
          SNP ID:
          rs2187668
          Gene
          HLA-DQA1
          Gene Name
          major histocompatibility complex, class II, DQ alpha 1
          Set Membership:
          > HapMap
          Chromosome Location:
          Chr.6: 32638107 - 32638107 on Build GRCh38
          Polymorphism:
          C/T, Transition Substitution
          Context Sequence [VIC/FAM]:

          CAATCATTTTACCACATGGTCCTCA[C/T]TTACTCTCAGCTGCCTCATATGTGT

          Assay ID C__58662585_20
          Size
          Availability Made To Order
          Catalog # 4351379
          Price
          Your Price
          Online offer:
          Check your price ›
          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details



          Species:

          Human

          dbSNP Submissions:

          63 submissions

          Phenotype:

          MIM: 146880

          Literature Links:

          HLA-DQA1 PubMed Links

          Allele Nomenclature:

          Minor Allele Frequency:

          1000Genome Applied Biosystems® HapMap
          Global
          A (0.08)
          (0.92)
          Caucasian - Not Available CEPH (CEU)
          A (0.08)
          (0.92)
          SAS
          A (0.08)
          (0.92)
          African American - Not Available YRI (Yoruba)
          A (0.08)
          (0.92)
          EAS - Not Available Chinese - Not Available JPT (Japanese)
          A (0.03)
          (0.97)
          EUR
          A (0.11)
          (0.89)
          Japanese - Not Available CHB (Han Chinese)
          A (0.07)
          (0.93)
          AFR - Not Available
          HLA-DQA1 - major histocompatibility complex, class II, DQ alpha 1
          Transcript Accession SNP Location SNP Type Observed Codons Observed Amino Acid Protein ID
          NM_002122.3 Intron NP_002113.2
          XM_006715079.3 Intron XP_006715142.1

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          More Information


          Set Membership:

          HapMap

          Panther Classification:

          Molecular Function -

          defense/immunity protein major histocompatibility complex antigen

          Gene Ontology Categories:

          Function(s) Process(es)

          immune response
          antigen processing and presentation of exogenous peptide antigen via MHC class II
          T cell costimulation
          T cell receptor signaling pathway
          interferon-gamma-mediated signaling pathway
          MHC class II receptor activity
          peptide antigen binding

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          Host server : magellan-search-green-7d94cb4b65-4lm45:80/100.66.75.98:80.
          git-commit: c9e08c96761173abe34e68f880379696776a4827
          git-url: https://github.com/thermofisher/magellan-search
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