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- Gene Symbol:
-
Picalm - Gene Name:
- phosphatidylinositol binding clathrin assembly protein
- Gene Aliases:
- Calm
- Chromosome Location:
- Chr.1: 154377234 - 154458922 on Build Rnor_6.0
- Species:
- Rat
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Picalm | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_053554.2 | NP_446006.1 | 19 - 20 | 1928 | 91 | |
| XM_006229676.2 | XP_006229738.1 | 20 - 21 | 2257 | 91 | ||
| XM_006229677.2 | XP_006229739.1 | 19 - 20 | 2233 | 91 | ||
| XM_006229678.2 | XP_006229740.1 | 19 - 20 | 2218 | 91 | ||
| XM_006229683.2 | XP_006229745.1 | 19 - 20 | 2107 | 91 | ||
| XM_006229684.2 | XP_006229746.1 | 19 - 20 | 2092 | 91 | ||
| XM_006229685.2 | XP_006229747.1 | 18 - 19 | 2068 | 91 | ||
| GenBank mRNA | AF041373.1 | - | 18 - 19 | 1800 | 91 | |
| AF041374.1 | - | 19 - 20 | 1929 | 91 | ||
| AY724477.1 | - | 18 - 19 | 1793 | 91 | ||
| BC100142.1 | - | 19 - 20 | 1989 | 7456159 | 91 | |
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC0100001998.rn.1Set Membership: |
Ambion siRNA available
Amplicon length between 86 and 100
3' Most
Mammalian Gene Collection
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Matching Ambion siRNAs:
Panther Classification:
Gene Ontology Categories:
Function(s)
Process(es)
receptor-mediated endocytosis
axonogenesis
cell proliferation
negative regulation of gene expression
synaptic vesicle maturation
vesicle-mediated transport
endosomal transport
hemopoiesis
regulation of endocytosis
receptor internalization
regulation of protein localization
cargo loading into vesicle
positive regulation of transcription, DNA-templated
negative regulation of receptor-mediated endocytosis
clathrin coat assembly
dendrite morphogenesis
regulation of protein transport
iron ion homeostasis
clathrin-mediated endocytosis
iron ion import into cell
positive regulation of neuron death
positive regulation of beta-amyloid formation
regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process
positive regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process
negative regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process
protein binding
1-phosphatidylinositol binding
SH3 domain binding
clathrin binding
clathrin heavy chain binding
clathrin adaptor activity
identical protein binding
receptor-mediated endocytosis
axonogenesis
cell proliferation
negative regulation of gene expression
synaptic vesicle maturation
vesicle-mediated transport
endosomal transport
hemopoiesis
regulation of endocytosis
receptor internalization
regulation of protein localization
cargo loading into vesicle
positive regulation of transcription, DNA-templated
negative regulation of receptor-mediated endocytosis
clathrin coat assembly
dendrite morphogenesis
regulation of protein transport
iron ion homeostasis
clathrin-mediated endocytosis
iron ion import into cell
positive regulation of neuron death
positive regulation of beta-amyloid formation
regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process
positive regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process
negative regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process
protein binding
1-phosphatidylinositol binding
SH3 domain binding
clathrin binding
clathrin heavy chain binding
clathrin adaptor activity
identical protein binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P001525 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_43_P12852 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 646033 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 227576 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 192346 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 11290 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 157640 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 18525 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 58063 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 491652 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 18671 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 950971 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 790991 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 970420 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 261722 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 894075 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 266790 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 401735 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 960058 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 642325 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 334510 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 908145 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 17361 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 44411 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 594243 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 939694 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 597855 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 665019 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 504074 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 104004 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 670820 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 527361 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 592694 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 753341 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 790651 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 102879 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 103040 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 892650 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 521882 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 265846 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 663269 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 927439 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 540284 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 70898 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 131108 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 941353 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 341485 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 947969 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 163400 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 6573 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 493718 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 377223 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 236839 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 861511 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 86413 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 266439 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 730293 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 846515 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 446824 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 747923 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 439328 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 931736 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 718823 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 814070 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 503709 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 50989 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 112755 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 163046 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 162339 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 84508 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 137370 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 72989 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 79027 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 6703 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 23318 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P001525 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_43_P12852 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_43_P12852 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P001525 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_43_P12852 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P001525 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P360795 | - | - |
| Matsumoto (Agilent Rat cDNA Microarray G4105A) | 700601617 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 32609 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 2740 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 42231 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 56929 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 40900 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 46512 | - | - |
| Agilent Rat cDNA Microarray (G4105A) | 700601617 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10708584 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10708573 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10708583 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10708579 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10708580 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10708566 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10708574 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10708581 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10708582 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10708570 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10708576 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10708586 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10708568 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10708572 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10708578 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10708577 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10708567 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10708569 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10708571 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10708575 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10708585 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10708565 | - | - |
| Rat Genome 230 2.0 Array | 1369452_PM_a_at | - | - |
| Rat Genome 230 2.0 Array | 1373877_at | - | - |
| Rat Genome 230 2.0 Array | 1369452_a_at | - | - |
| Rat Genome 230 2.0 Array | 1373877_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1369452_a_at | - | - |
| Affymetrix HT Rat Focus Array | 1369452_PM_a_at | - | - |
| Affymetrix HT Rat Focus Array | 1373877_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1373877_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR0100015530.rn.1 | TC0100001998.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0100015532.rn.1 | TC0100001998.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0100015533.rn.1 | TC0100001998.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0100015534.rn.1 | TC0100001998.rn.1 | RTA TC |
| Rat Expression Set 230 | 1369452_PM_a_at | - | - |
| Rat Expression Set 230 | 1369452_a_at | - | - |
| Rat Expression Set 230 | 1373877_PM_at | - | - |
| Rat Expression Set 230 | 1373877_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10708565 | - | - |
| Rat Genome U34 Set | AF041373_s_at | - | - |
| Rat Genome U34 Set | rc_AI169149_at | - | - |
| Rat Genome U34 Set | AF041373_s_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 22186588 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1374519 | - | - |
| RatRef-12 Expression BeadChip | ILMN_56526 | - | - |
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