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See other SBNO2 CNV Assays ›
Gene Symbol
SBNO2
Assay Reference Genome
Location

Chr.19:1111589 on build GRCh38
Cytoband
19p13.3
Assay ID Hs00443812_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 22904

Gene Name:

 strawberry notch homolog 2

Gene Aliases:

 KIAA0963, SNO, STNO

Location:

 Chr.19:1107634-1174283 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 24 - Exon 25
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SBNO2 NM_001100122.1 NP_001093592.1
NM_014963.2 NP_055778.2
XM_011527804.2 XP_011526106.1
AB023180.1
AK074102.1 BAB84928.1
AK125139.1
AK292407.1
AK296849.1
AK300981.1
BC106021.1 AAI06022.1
BC127011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1058677 Chr.19:1054061 - 1283189 on Build GRCh38 Loss ARHGAP45 CBARP MIDN CIRBP-AS1 STK11 GPX4 SBNO2 EFNA2 C19orf24 LOC102725180 CIRBP POLR2E ATP5D ABCA7
nsv1056200 Chr.19:1107036 - 1193347 on Build GRCh38 Gain SBNO2 LOC102725180
dgv136n111 Chr.19:1038223 - 1329640 on Build GRCh38 Deletion ARHGAP45 CBARP CNN2 MIDN CIRBP-AS1 STK11 GPX4 SBNO2 EFNA2 C19orf24 LOC102725180 CIRBP POLR2E ATP5D ABCA7
nsv470102 Chr.19:1046521 - 1152656 on Build GRCh38 Loss ARHGAP45 SBNO2 POLR2E ABCA7 GPX4
nsv516646 Chr.19:1110830 - 1146101 on Build GRCh38 Loss SBNO2
nsv470103 Chr.19:1086044 - 1325151 on Build GRCh38 Gain ARHGAP45 CBARP MIDN CIRBP-AS1 STK11 GPX4 SBNO2 EFNA2 C19orf24 LOC102725180 CIRBP POLR2E ATP5D
nsv953939 Chr.19:1104902 - 1174301 on Build GRCh38 Deletion SBNO2 LOC102725180 GPX4
nsv9662 Chr.19:893394 - 1317740 on Build GRCh38 Gain ARHGAP45 CBARP R3HDM4 CNN2 RNU6-9 KISS1R GRIN3B MIDN CIRBP-AS1 RNU6-2 STK11 TMEM259 GPX4 SBNO2 EFNA2 LOC105372235 C19orf24 LOC102725180 CIRBP POLR2E ARID3A WDR18 ATP5D ABCA7
nsv1160555 Chr.19:887275 - 1346084 on Build GRCh38 Deletion ARHGAP45 CNN2 RNU6-9 KISS1R GRIN3B MIDN CIRBP-AS1 RNU6-2 TMEM259 SBNO2 LOC105372235 LOC102725180 CIRBP ATP5D CBARP R3HDM4 STK11 GPX4 EFNA2 C19orf24 MED16 POLR2E ARID3A WDR18 ABCA7
nsv469845 Chr.19:951640 - 1144486 on Build GRCh38 Loss ARHGAP45 SBNO2 LOC105372235 CNN2 GRIN3B POLR2E RNU6-2 ARID3A WDR18 ABCA7 TMEM259 GPX4
nsv833704 Chr.19:951641 - 1144486 on Build GRCh38 Gain ARHGAP45 SBNO2 LOC105372235 CNN2 GRIN3B POLR2E RNU6-2 ARID3A WDR18 ABCA7 TMEM259 GPX4
nsv578215 Chr.19:1095062 - 1124032 on Build GRCh38 Gain SBNO2 POLR2E GPX4
dgv135n111 Chr.19:1014378 - 1156398 on Build GRCh38 Deletion ARHGAP45 SBNO2 CNN2 POLR2E RNU6-2 ABCA7 TMEM259 GPX4
nsv828367 Chr.19:1102094 - 1113817 on Build GRCh38 Gain SBNO2 GPX4
nsv1071487 Chr.19:1111500 - 1112601 on Build GRCh38 Deletion SBNO2

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More Information


Additional Information:

For this assay, SNP(s) [rs78026836] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s)


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