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          • Home
          • › Search Tool
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          • › Hs01198129_cn
          See other KDM5C CNV Assays ›
          Gene Symbol
          KDM5C
          Assay Reference Genome
          Location

          Chr.X:53214710 on build GRCh38
          Cytoband
          Assay ID Hs01198129_cn
          Size
          Availability Made To Order
          Catalog # 4400291
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          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Target Gene Details

          Entrez Gene ID:

          8242

          Gene Name:

          lysine demethylase 5C

          Gene Aliases:

          DXS1272E, JARID1C, MRX13, MRXJ, MRXS16, MRXSCJ, MRXSJ, SMCX, XE169

          Location:

          Chr.X:53176277-53225207 on Build GRCh38

          Assay Gene Location:

          Overlaps Intron 8 - Exon 8
          Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
          KDM5C NM_001146702.2 NP_001140174.1
          NM_001282622.3 NP_001269551.1
          NM_001353978.3 NP_001340907.1
          NM_001353979.2 NP_001340908.1
          NM_001353981.2 NP_001340910.1
          NM_001353982.2 NP_001340911.1
          NM_001353984.2 NP_001340913.1
          NM_004187.5 NP_004178.2
          NR_148672.2
          NR_148673.2
          NR_148674.2
          AK304732.1 BAG65494.1
          AK308077.1
          BC054499.2 AAH54499.1
          EF613277.1 ABR13544.1
          L25270.1 AAA61302.1

          Target Copy Number Variation Details

          DGV Version:

          Release date: 2025-12-01, GRCh GRCh38
          Target
          Variation
          Location CNV
          Subtype
          Genes
          esv2740175 Chr.X:52862926 - 55652533 on Build GRCh38 Deletion APEX2 LOC100421746 SNORA109 GNL3L MIR6895 IQSEC2 XAGE3 HSD17B10 TSPYL2 FGD1 RIBC1 PFKFB1 MAGED2 PAGE3 PAGE2 MIRLET7F2 USP51 FOXR2 VCF2 MAGEH1 MIR4536-2 KANTR SMC1A WNK3 PAGE5 MIR98 MIR6857 ITIH6 TSR2 KDM5C GPR173 FAM120C FAM156A SNORA11G MIR4536-1 PHF8 ALAS2 FAM156B HUWE1 MIR6894 SNORA11 TRO PAGE2B
          nsv435891 Chr.X:52861979 - 55653313 on Build GRCh38 Deletion APEX2 LOC100421746 SNORA109 GNL3L MIR6895 IQSEC2 XAGE3 HSD17B10 TSPYL2 FGD1 RIBC1 PFKFB1 MAGED2 PAGE3 PAGE2 MIRLET7F2 USP51 FOXR2 VCF2 MAGEH1 MIR4536-2 KANTR SMC1A WNK3 PAGE5 MIR98 MIR6857 ITIH6 TSR2 KDM5C GPR173 FAM120C FAM156A SNORA11G MIR4536-1 PHF8 ALAS2 FAM156B HUWE1 MIR6894 SNORA11 TRO PAGE2B
          nsv5882057 Chr.X:52862950 - 55652570 on Build GRCh38 Deletion APEX2 LOC100421746 SNORA109 GNL3L MIR6895 IQSEC2 XAGE3 HSD17B10 TSPYL2 FGD1 RIBC1 PFKFB1 MAGED2 PAGE3 PAGE2 MIRLET7F2 USP51 FOXR2 VCF2 MAGEH1 MIR4536-2 KANTR SMC1A WNK3 PAGE5 MIR98 MIR6857 ITIH6 TSR2 KDM5C GPR173 FAM120C FAM156A SNORA11G MIR4536-1 PHF8 ALAS2 FAM156B HUWE1 MIR6894 SNORA11 TRO PAGE2B
          nsv6107009 Chr.X:52861028 - 55652526 on Build GRCh38 Duplication APEX2 LOC100421746 SNORA109 GNL3L MIR6895 IQSEC2 XAGE3 HSD17B10 TSPYL2 FGD1 RIBC1 PFKFB1 MAGED2 PAGE3 PAGE2 MIRLET7F2 USP51 FOXR2 VCF2 MAGEH1 MIR4536-2 KANTR SMC1A WNK3 PAGE5 MIR98 MIR6857 ITIH6 TSR2 KDM5C GPR173 FAM120C FAM156A SNORA11G MIR4536-1 PHF8 ALAS2 FAM156B HUWE1 MIR6894 SNORA11 TRO PAGE2B

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          More Information


          Set Membership:

          Intragenic Non-exonic DGV Variation

          Gene Ontology Categories:

          Function(s) Process(es)

          chromatin organization
          chromatin remodeling
          regulation of transcription, DNA-templated
          negative regulation of transcription, DNA-templated
          rhythmic process
          DNA binding
          protein binding
          zinc ion binding
          oxidoreductase activity
          histone demethylase activity
          histone demethylase activity (H3-K4 specific)
          histone demethylase activity (H3-trimethyl-K4 specific)
          metal ion binding
          dioxygenase activity

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