Name: [Hs03377000_cn] [SSU72]
Creator: Thermo Fisher Scientific
Keywords: [SSU72] Assay, [SSU72 homolog, RNA polymerase II CTD phosphatase] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	29101
Gene Name:	SSU72 homolog, RNA polymerase II CTD phosphatase
Gene Aliases:	HSPC182, PNAS-120
Location:	Chr.1:1541673-1574863 on Build GRCh38
Assay Gene Location:	Within Intron 2

Gene Symbol	Transcript Accession	Protein ID
SSU72	NM_014188.3	NP_054907.1
	AF161530.1	AAF29145.1
	AF277178.1	AAK07538.1
	AJ276409.1	CAC81713.1
	AK001809.1	BAA91921.1
	AK129493.1
	AK297505.1	BAG59918.1
	AK310067.1
	BC008070.2	AAH08070.1

Target Copy Number Variation Details

DGV Version:

Release date: 2025-12-01, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv545000	Chr.1:1421170 - 1573654 on Build GRCh38	Loss	ATAD3A ATAD3C ANKRD65-AS1 SDHB VWA1 TMEM278 TMEM240 SSU72 LOC107985729 ATP13A2 PADI2 ANKRD65 LINC01770 ATAD3B
nsv4036425	Chr.1:1559960 - 1579531 on Build GRCh38	Duplication	SSU72-AS1 SSU72
nsv10161	Chr.1:776731 - 1777210 on Build GRCh38	Gain+Loss	LOC105376805 MFAP2 LOC100288069 B3GALT6 SDF4 MRPL20 PERM1 PUSL1 C1orf159 NOC2L RNU1-4 LOC102724562 TNFRSF4 TTLL10-AS1 ANKRD65-AS1 MMP23B VWA1 LOC107985728 AGRN CPTP SLC35E2B CDK11A DVL1 TNFRSF18 LOC107985729 MRPL20-DT LOC440570 MIR429 ATAD3B LOC100288175 FAM87B TMEM240 SNORD167 LOC105378586 MIB2 HES4 ESPNP SCNN1D MST1P2 RNVU1-28 PADI2 LOC124905564 ATAD3C CCNL2 SSU72-AS1 RNU1-2 TMEM278 LINC03126 AKT3 RNU1-3 RNF223 ACAP3 MIR6727 MXRA8 CROCCP2 KLHL17 AKT3-IT1 AURKAIP1 CDK11B SAMD11 MMP23A F13B MRPL20-AS1 RNVU1-18 LINC01342 INTS11 MIR6808 MIR3675 ATP13A2 LINC01128 SLC35E2A FAM41C SDHB MIR6726 LINC00115 FNDC10 LOC124903857 LINC01786 TTLL10 LINC01409 LINC02593 SSU72 EIF1AXP1 CROCC NADK TAS1R3 MIR200B ATAD3A UBE2J2 NBPF1 C1QTNF12 PLEKHN1 ISG15 MIR200A ANKRD65 LINC01770 LOC105378948 LOC284600
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	SCAMP3 LINC02783 MIR3972 LOC105376805 MFAP2 NOTCH2NLR B3GALNT2 CLK2 LOC100288069 E2F2 B3GALT6 MTATP6P1 LOC100129534 PERM1 FCER1A C1orf159 NOC2L MIR1302-2 TNFRSF4 FAM138A LOC127239154 TTLL10-AS1 PANK4 ANKRD65-AS1 OR2T11 GNG4 GBA1 LOC107985728 GPATCH4 MTCO2P12 AGRN CPTP SLC35E2B CDK11A DVL1 MIR4677 TNFRSF18 CFH OR10J4 RNU1-1 MRPL20-DT LOC440570 HAPLN2 ATAD3B LOC100288175 SLC16A1 FAM87B LINC02602 LOC124905320 RNVU1-7 LOC105379522 SLC16A1-AS1 RNA5S13 NLRP3 MIB2 OR2T5 MMEL1 PADI2 MIR6859-2 LOC124905564 PRAMEF22 BCAN-AS2 CCNL2 MTND2P28 HNRNPCL4 MORN1 TMEM278 LINC03126 PRAMEF34P PADI6 PRAMEF4 OR2T34 RNU1-3 LINC01783 PRKCZ-DT LOC124905558 OR2T27 MXRA8 ZNF496 OR4F29 LOC101928626 CROCCP2 GNB1-DT KLHL17 GABRD PRAMEF33 PRAMEF2 NBPF8 MMP23A SLC25A24 MIR4666A OR10J3 MIR12136 MRPL20-AS1 RNVU1-18 LINC01342 MIR6859-1 LINC01719 ID3 RNA5S4 HNRNPCL2 ANO7L1 PRXL2B MIR9-1HG NAXE OR2T29 TTC34 SLC35E2A DDX11L17 FAM41C OR4F16 HNRNPCL1 RNA5S7 KMT2CP1 GNB1 LOC112268219 LOC105378589 MIR6726 LINC00115 LOC124903857 LINC01786 TTLL10 LINC01409 LOC105376859 ZNF496-DT PRAMEF13 MEF2D LOC100996583 MMEL1-AS1 MTND1P23 PDE4DIPP2 MTCO3P12 RCC2-AS1 MIR200B LOC343052 FAAP20 ATAD3A RNA5S2 H2AC25 NBPF1 NBPF26 RNA5S16 SCMH1-DT KIF26B OR2G6 CEP170 RNA5S10 PRKCZ H3-4 ARHGEF19 RNA5S5 LINC01770 TMEM52 RNA5S14 ZNF436-AS1 PPIAL4F LRIG2-DT DUSP5P1 PRAMEF5 SDF4 CROCCP3 NECAP2 MRPL20 PUSL1 GATAD2B OR2T2 RNU1-4 PRAMEF36P LOC102724562 OR2T35 LINC01347 CPLANE2 LOC101060632 HHAT TNFRSF14-AS1 MMP23B AKR7A2P1 LOC102724250 OR4F5 OR2T10 CFHR2 VWA1 VN1R5 NBPF6 RNA5S3 OR2T6 LOC112268260 RNA5S11 LOC107985729 MST1L SKI ATP5IF1 MIR429 TBCE MIR1976 PKLR OR2T4 IQGAP3 TCEA3 CFHR5 SPATA21 DNAJC8 LOC100132287 TMEM240 SNORD167 LOC105378947 LOC105378586 HES4 FOXO6 ESPNP SCNN1D MST1P2 OR2T3 RNVU1-28 NBPF4 DDX11L1 RNA5S8 RNA5S9 ATAD3C SSU72-AS1 ATP6V1G3 RNU1-2 PRAMEF27 AKT3 ENTREP3 SDCCAG8 MIR4735 OR2T1 RNF187 PRAMEF18 RNF223 ACAP3 OR2T7 MIR6727 KCNT2 PRAMEF7 OR14I1 GBA1LP PRAMEF11 PRKCZ-AS1 RNA5S15 TNFRSF14 LOC729737 BTNL10P AKT3-IT1 HES5 SERTAD4 AURKAIP1 CDK11B MTX1 SAMD11 RNA5S17 F13B MTCO1P12 MED18 WASH9P LOC107985524 RNVU1-19 INTS11 LINC01355 RNA5S12 OR10J1 PTPRC LOC105371215 PTPRC-AS1 MIR6808 MIR3675 PADI4 RNA5S1 ATP13A2 LINC01128 SESN2 FOXO6-AS1 CFHR4 RNA5S6 INTS3 PRAMEF8 LOC101928163 SDHB SERTAD4-AS1 PRAMEF10 SLC27A3 FNDC10 RCC2 PLCH2 PRAMEF26 H2BC26 LINC02593 SSU72 EIF1AXP1 PPIAL4A CROCC SEPTIN14P13 LOC105373265 NADK TAS1R3 PRAMEF9 PRAMEF6 HNRNPCL3 FBXO42 CFAP74 PRAMEF25 CALML6 BCAN RPS6KA1 UBE2J2 ZNF436 WASH7P C1QTNF12 ASAP3 SZRD1 PLEKHN1 ISG15 RHOU HCN3 PADI1 MIR200A LOC101928177 RNVU1-2A LINC01772 PADI3 PFN1P2 HNRNPR ANKRD65 LOC105378948 TTC24 LOC284600
nsv950452	Chr.1:1106921 - 1637538 on Build GRCh38	Deletion	MXRA8 LOC105376805 MFAP2 CROCCP2 B3GALT6 SDF4 MRPL20 PUSL1 AURKAIP1 C1orf159 CDK11B TNFRSF4 TTLL10-AS1 ANKRD65-AS1 MRPL20-AS1 MMP23B LINC01342 VWA1 INTS11 CPTP MIR6808 MIR3675 DVL1 TNFRSF18 LOC107985729 ATP13A2 MRPL20-DT MIR429 ATAD3B SDHB TMEM240 SNORD167 MIR6726 FNDC10 LOC105378586 MIB2 LINC01786 TTLL10 SCNN1D MST1P2 SSU72 RNVU1-28 PADI2 CROCC TAS1R3 MIR200B ATAD3A ATAD3C CCNL2 SSU72-AS1 RNU1-2 UBE2J2 NBPF1 TMEM278 C1QTNF12 LINC03126 MIR200A ACAP3 MIR6727 ANKRD65 LINC01770
nsv6331676	Chr.1:1559222 - 1563401 on Build GRCh38	Deletion	SSU72
nsv1011818	Chr.1:1394332 - 1575421 on Build GRCh38	Gain	ATAD3A ATAD3C ANKRD65-AS1 CCNL2 SSU72-AS1 MRPL20-AS1 SDHB MFAP2 VWA1 TMEM278 TMEM240 MRPL20 SSU72 LOC107985729 ATP13A2 MRPL20-DT PADI2 ANKRD65 LINC01770 ATAD3B
esv2758913	Chr.1:1389149 - 2092899 on Build GRCh38	Gain+Loss	SDHB GNB1 MFAP2 TMEM240 LOC105378589 FNDC10 LOC105378586 GNB1-DT MIB2 GABRD MRPL20 SSU72 CDK11B PADI2 MMP23A NADK ATAD3A ATAD3C ANKRD65-AS1 CCNL2 SSU72-AS1 CFAP74 MRPL20-AS1 CALML6 MMP23B VWA1 TMEM278 SLC35E2B CDK11A PRKCZ LOC107985729 PRKCZ-DT ATP13A2 MRPL20-DT ANKRD65 LINC01770 TMEM52 ATAD3B SLC35E2A