Copy Measure Annotation Settings
Add-on

Copy Measure Annotation Settings

Tcl

15 Apr 2020 - This Tcl script-object can be used to copy visualisation settings from one measure to all others in a Measurement module. It is also possible to save/load settings to/from a text file.  Learn more

Caption From Port
Add-on

Caption From Port

Tcl

15 Apr 2020 - Use this module to fill the text field of a Caption module with the value of a port of another module.  Learn more

Scale-Space Laplacian of Gaussian Filter
Add-on

Scale-Space Laplacian of Gaussian Filter

Python (pyscro)

15 Apr 2020 - Image processing filter enhancing spherical or blob like objects of various sizes.  Learn more

Amira User's Guide translated to Japanese
Add-on How-to

Amira User's Guide translated to Japanese

Demo, Misc

29 Jan 2020 - You will find here a large selection of Amira tutorials translated to Japanese.  Learn more

Create Label Annotations
Add-on

Create Label Annotations

Tcl

13 Dec 2019 - This module creates label annotations from the result of a Label Analysis with the help of the Measurement tool.  Learn more

Average Interleaved Data
Add-on

Average Interleaved Data

Python (pyscro), Project (hx, pgo)

21 Oct 2019 - The purpose of this python script object is to average interleaved data.  Learn more

2D SEM  (White) Grain Segmentation
Add-on

2D SEM (White) Grain Segmentation

Recipe (hxrecipe), Data

21 Oct 2019 - This recipe segments and calculate the physical attributes of the white grains in the 2D SEM image  Learn more

Load a Numpy array into PerGeos-Amira-Avizo using the Python API
Add-on

Load a Numpy array into PerGeos-Amira-Avizo using the Python API

Python (pyscro)

21 Oct 2019 - This script simply reads and loads numpy arrays in a user specified directory into PerGeos/Amira-Avizo as an image.  Learn more

Random Forests for Multiclass Segmentation using Python API in PerGeos
Add-on

Random Forests for Multiclass Segmentation using Python API in PerGeos

Python (pyscro), Project (hx, pgo), Data

21 Oct 2019 - Simple demonstration of feature computation where the feature vector contains intensity and 2D eigenvalues (X & Y). This example uses random forests implementation from the sklearn package.  Learn more

Length Distribution Analysis
Add-on How-to

Length Distribution Analysis

Recipe (hxrecipe), Project (hx, pgo), Demo, Data

21 Oct 2019 - This tutorial demonstrated how to quantify thickness distribution along the length  Learn more

Porosity Clustering Analysis and Distance to Surface
Add-on How-to

Porosity Clustering Analysis and Distance to Surface

Recipe (hxrecipe), Project (hx, pgo), Demo, Data

21 Oct 2019 - This tutorial demonstrates the steps necessary to quantify porosity distribution and perform a pore distance to surface analysis.  Learn more

Cracks and Cavities Segmentation in CT Data
Add-on

Cracks and Cavities Segmentation in CT Data

Recipe (hxrecipe), Data

21 Oct 2019 - This recipe is useful to segment data with cracks, pores, or cavities.  Learn more

Feature segmentation for non-uniform illumination and low-contrast images
Add-on

Feature segmentation for non-uniform illumination and low-contrast images

Recipe (hxrecipe)

17 Oct 2019 - The recipe lets you segment small features on images with non-uniform illumination and low contrast.  Learn more

Depthwise Volume Fraction
Add-on

Depthwise Volume Fraction

Python (pyscro)

17 Oct 2019 - This module allows the user to compute the volume fraction per separated region depending on depth from the surface of a segmented object.  Learn more

Eagleford Shale FIB-SEM Segmentation
Add-on

Eagleford Shale FIB-SEM Segmentation

Recipe (hxrecipe)

17 Oct 2019 - This recipe guided workflow will result in a 5-phase segmentation applicable to the included dataset and most typical FIB-SEM data. Input Data, the Recipe, Output data are included here.  Learn more

Auto-Crop Script Module
Add-on

Auto-Crop Script Module

Tcl

16 Oct 2019 - Automatically crop your volume data to reduce its size.  Learn more

Simulation-Based Tortuosity Estimation of Porous Media
Add-on

Simulation-Based Tortuosity Estimation of Porous Media

Tcl

16 Oct 2019 - This Xtra provides four methods for calculating the tortuosity factor based on these XLab properties: Absolute Permeability, Molecular Diffusion, Formation Factor, and Thermal Conductivity.  Learn more

PerGeos TCL script for processing all files in a folder with a recipe
Add-on

PerGeos TCL script for processing all files in a folder with a recipe

Tcl

16 Oct 2019 - Process all files in a folder by applying the same recipe to all of them individually.  Learn more

Different Methods to Measure the Volume of Fibers Generated by XFiber Extension
Add-on How-to

Different Methods to Measure the Volume of Fibers Generated by XFiber Extension

Project (hx, pgo), Demo

16 Oct 2019 - This guideline aims to identify different ways to analyze the volume fraction of fibers traced by the XFiber extension.  Learn more

Relative Pore Fraction
Add-on How-to

Relative Pore Fraction

Recipe (hxrecipe), Demo, Data

16 Oct 2019 - The calculation of a relative pore fraction for each separated grains.  Learn more

Export Spatial Graph to MS Excel CSV Document
Add-on How-to

Export Spatial Graph to MS Excel CSV Document

Recipe (hxrecipe), Tcl, Demo

16 Oct 2019 - An Amira-Avizo recipe to export to a CSV document which can be used in MS Excel for further analysis.  Learn more