kMeans Clustering on Label Analysis (Python)
Python (pyscro)
18 Nov 2021 - This Xtra implements kMeans clustering on a label analysis spreadsheet. Separated objects can be clustered based on any measure group that is inbuilt or user customized. Learn more
Using Tcl Command Module for Multi-File OBJ Export
Tcl, Project (hx, pgo)
7 Sep 2021 - The Tcl Command Module makes it easy to export the surfaces of single objects from a multi-object surface as OBJ (Wavefront) files. Learn more
Browse TensorBoard of old Deep Learning Training sessions
Deep learning model, Python (pyscro)
21 May 2021 - This Xtra contains a module that allows you to browse TensorBoard logs from previous Deep Learning Training sessions. Learn more
Python (pyscro)
29 Mar 2021 - AddDataToPointCloud writes data defined on mesh-nodes into a point-cloud with an equal number of points. Together with the "PointCloudToSpreadsheet" Xtra, this module can be used, for example, to export the results created by the Surface Distance module. Learn more
Python (pyscro), Project (hx, pgo)
29 Mar 2021 - The Extract Oriented Labels module extracts every label from the input label image, and resamples each image along its own main orientations (or eigenvectors). Learn more
Tcl
8 Mar 2021 - This Xtra contains a script module to fit molecular models to density maps, a process frequently called "docking". Learn more
Image Segmentation Evaluation Using Standard Metrics
Python (pyscro), Project (hx, pgo)
8 Mar 2021 - Segmentation evaluation using standard precision, and recall metrics for comparing two segmentation labels. Learn more
Getting Started with Flatten Module
Project (hx, pgo), Demo
8 Mar 2021 - This tutorial demonstrates use of the Flatten experimental module to create interactive contours by defining the unfolding surface while respecting the constraints of the module inputs. Learn more
Python (pyscro)
22 Jan 2021 - This Python script-object allows you to convert a point-cloud object to a spreadsheet object. Learn more
Python (pyscro), Data
4 Jan 2021 - This module performs an adaptive global thresholding of the input image by computing a deviation from the mean of its grayscale values. Learn more
Tcl
17 Nov 2020 - This module creates a spreadsheet that contains the measurement and annotation data (generated with the Measurement tool) that can be used for further analysis. Learn more
Auto Threshold for Multi-Thresholding
Tcl
19 Oct 2020 - The combination of Auto Thresholding and Multi-Thresholding makes it easy to create precise surfaces without additional smoothing, using the Generate Surface's smoothing option "Existing Weights". Learn more
Python (pyscro)
19 Oct 2020 - This Xtra creates a volume projection along any orthogonal axis using arithmetic operations. Learn more
Explode Surface Animation Script
Tcl
5 Oct 2020 - A script that will animate the expansion of pieces of a surface. Contains the script, documentation, an example surface, and a video of the finished result. Learn more
Tcl
24 Aug 2020 - A module that allows you to filter particles selectively, based on their contact with each border of the image. Learn more
Multi-Scale Cylinder Correlation
Python (pyscro), Project (hx, pgo)
30 Jul 2020 - This module gives better results for fiber-tracing in the case of multiple fibers with differing or varying diameters in the same dataset. Learn more
Segmentation of Pathological Osteocytes in an Undecalcified Piece of Mouse Bone using Amira-Avizo2D
Recipe ISP, IVP, A2D
3 Jul 2020 - This is a workflow to segment out osteocytes in mouse bone sample using Amira-Avizo2D. Learn more
Extracting and Visualizing Local Statistics from Fibrous Materials
Project (hx, pgo)
3 Jul 2020 - This XTRA entry discusses the application of the “Spatial Graph Local Statistics” to extract statistical information from traced fibers in a fibrous material. The sample is 50% glass fiber-reinforced polymer (GFRP), courtesy of EMS Grivory. Learn more
Tcl, Project (hx, pgo), Data
17 Jun 2020 - To make use of XFiber, the user usually needs to input many parameters. This package provides 2 tools to ease Xfiber process by presetting Cylinder Correlation and Auto Trace Correlation modules values. Learn more
Python (pyscro)
11 May 2020 - This module extracts a specified label region by its ID. Learn more
Copy Measure Annotation Settings
Tcl
15 Apr 2020 - This Tcl script-object can be used to copy visualisation settings from one measure to all others in a Measurement module. It is also possible to save/load settings to/from a text file. Learn more