Ion Library TaqMan™ Quantitation Kit
Ion Library TaqMan™ Quantitation Kit
Ion Torrent™

Ion Library TaqMan™ Quantitation Kit

The Ion Library TaqMan™ Quantitation Kit is an easy-to-use, flexible solution for the accurate quantitation of library input for the詳細を見る
製品番号(カタログ番号)数量
4468802250 reactions, 2 Tubes
製品番号(カタログ番号) 4468802
価格(JPY)
114,400
Each
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数量:
250 reactions, 2 Tubes
The Ion Library TaqMan™ Quantitation Kit is an easy-to-use, flexible solution for the accurate quantitation of library input for the Ion Torrent semiconductor sequencing workflow. This comprehensive kit provides a TaqMan™ qPCR mix and library standard to detect and quantify femtomolar amounts of Ion Fragment Libraries. With universal cycling conditions that allow both fast and standard cycling, the Ion Library TaqMan Quantitation kit supports most real-time platforms. This universal kit provides greater accuracy and specificity compared to non-probe-based methods, delivering simplicity and speed to the PGM™ System sequencing workflow.

With The Ion Library TaqMan Quantitation Kit You Get:

• Precision— The TaqMan™ Assay provides greater specificity and accuracy in detecting properly adapted, amplifiable templates over non-probe-based quantitation methods.
• Sensitivity— The protocol supports quantitation of femtomolar amounts of fragment libraries.
• Simplicity— The validated, ready-to-use qPCR standard requires only a simple serial dilution to determine the optimal concentration of library to use for templated bead preparation.
• Versatility— The highly robust qPCR mix accommodates a wide range of cycling conditions and reaction volumes, and combines highly sensitive detection with a broad quantification range.
• Efficiency— qPCR-based methods use less material for quantification.

Quantitate Library Input for Use on the PGM™ System
The Ion Library TaqMan Quantitation Kit facilitates the quantitation of amplifiable template in an Ion fragment library for use during template preparation in the Ion Torrent sequencing workflow. Complete with TaqMan™ qPCR mix custom-designed for Ion library adapters and an Ion library control, the kit is a complete solution for determining the optimal amount of starting material needed for high quality sequencing results.

This Kit Includes:

• A custom TaqMan™ Assay designed for Ion library adaptors
• An optimized Ion Library Amplification mix
• An adapted E. Coli DH10B library control of a defined size constructed using the Ion Fragment Library Kit to yield an adapted library ∼190bp in size, providing essential components for quality control while maintaining flexibility to accommodate your laboratory needs.

Compatible With a Wide Range of Applications and Instruments
With the Ion Library TaqMan Quantitation Kit, most real-time instruments using either fast or standard cycling programs can be utilized to accurately quantitate genomic and amplicon libraries. These instruments include the Applied Biosystems 7900HT, 7300, 7500, ViiA 7, StepOne™, and StepOnePlus™ Systems. The kit has been validated for quantification of Ion Fragment Libraries. The Ion-specific E. Coli DH10B Library control included in the kit is recommended for use only as a qPCR control and not a sequencing control.
研究用途にのみご使用ください。診断目的には使用できません。
仕様
校正タイプSequencing - Library Quantitation
発光Visible
励起Visible
使用対象(アプリケーション)配列
使用対象 (装置)Ion PGM™ System and Ion S5 Plus
反応数250
製品ラインIon Torrent
製品タイプQuantitation Kit
数量250 reactions, 2 Tubes
サンプル量2.5 ml
出荷条件Wet Ice
ワークフローステップLibrary Quantitation
フォーマットキット
Unit SizeEach
組成および保存条件
Store components at -20° C

よくあるご質問(FAQ)

Ionライブラリーを長期保存したい場合はどうすればよいでしょうか?

長期保存を行いたい場合は、ライブラリーをlow TEでLoBindチューブに溶出し、希釈されていない状態で-20℃の霜取り機能付き冷凍庫に保存してください。

作製したIonライブラリーにアダプターダイマーがある場合、 Ion Library Quantation Kit (qPCR)で検出できますか?

検出できません。Ion Library Quantation KitによるqPCRでは、増幅可能なプライマーダイマーとライブラリーとを区別することができません。 そのため、 Bioanalyzerを用いてライブラリーのサイズ分布を確認し、アダプターダイマーが無いか確認することをお勧めします。 アダプターダイマーが含まれているライブラリーは、non-barcodedライブラリーの場合は~70 bp、barcodedライブラリーの場合は~90 bpに鋭いピークが見られます。

Bioanalyzerで作製したfragmentライブラリーを確認してみると70 bpか90 bpに大きなピークが見られます. これは何でしょうか?テンプレート調製に進んでも問題ないですか?

~ 70 bp、~90 bpのピークは、標準もしくはbarcoded アダプターダイマーです。アダプターダイマーはライゲーションのステップで生じてしまい、通常はサイズセレクションのステップで取り除かれます。アダプターダイマーはテンプレート調整の際にIon Sphere particles上に増幅されてしまうため、最終的なスループットが低下してしまいます。そのため、最終的な精製ステップをもう一度行うことによってアダプターダイマーを取り除くことを強くお勧めしています。

If adapter dimers are present in my library, can they be detected using the Ion Library TaqMan Quantitation Kit (qPCR)?

No, the Ion Library TaqMan Quantitation Kit for qPCR library quantification is unable to differentiate amplifiable primer-dimers from library fragments. We recommend assessing the library size distribution, including checking for the presence of adapter dimers, using the Bioanalyzer instrument. Libraries containing adapter dimers will have sharp peaks at ~70 bp for non-barcoded libraries or ~90 bp for barcoded libraries.

Find additional tips, troubleshooting help, and resources within our Next-Generation Sequencing Support Center.

What is included in the Ion AmpliSeq Microbiome Health Research Kit, Ion 550 bundle?

The Ion AmpliSeq Microbiome Health Research Kit, Ion 550 bundle (Cat. No. A46497) consists of the Ion AmpliSeq Microbiome Health Research - 16S rRNA Gene Pool, the Ion AmpliSeq Microbiome Health Research - Target Species Pool, the Ion AmpliSeq Library Kit Plus, the IonCode Barcode Adapters, the Ion 550 Kit - Chef, and the Ion 550 Chip Kit for the rapid preparation of barcoded sample libraries from bacterial DNA. Sufficient reagents are provided to prepare uniquely barcoded DNA libraries from 384 research samples.
Note: The Ion Library TaqMan Quantitation Kit (Cat. No. 4468802) must be purchased separately.

Find additional tips, troubleshooting help, and resources within our Next-Generation Sequencing Support Center.