Iterate Recipe
Add-on

Iterate Recipe

Python (pyscro)

17 Nov 2022 - This module allows you to run a given recipe while varying a chosen parameter value of any of the modules making up the recipe.  Learn more

Facies Classification from Well Logs
Add-on How-to

Facies Classification from Well Logs

Python (pyscro), Demo

3 Dec 2021 - Facies (rock type) classification from well logs using supervised machine learning algorithms.  Learn more

kMeans Clustering on Label Analysis (Python)
Add-on

kMeans Clustering on Label Analysis (Python)

Python (pyscro)

18 Nov 2021 - This Xtra implements kMeans clustering on a label analysis spreadsheet. Separated objects can be clustered based on any measure group that is inbuilt or user customized.  Learn more

Image Segmentation Evaluation Using Standard Metrics
Add-on

Image Segmentation Evaluation Using Standard Metrics

Python (pyscro), Project (hx, pgo)

8 Mar 2021 - Segmentation evaluation using standard precision, and recall metrics for comparing two segmentation labels.  Learn more

Large Data Visualization
Add-on How-to

Large Data Visualization

Demo, Misc

24 Feb 2021 - This video tutorial demonstrates how to deal with visualization of large datasets.  Learn more

Patch Extraction Tools for Deep Learning Data Preparation
Add-on

Patch Extraction Tools for Deep Learning Data Preparation

Python (pyscro)

22 Feb 2021 - A set of tools dedicated to the preparation of data for training Deep Learning models and reducing annotation time.  Learn more

Cylinder Slice with Native Resolution in Z
Add-on

Cylinder Slice with Native Resolution in Z

XPand module

10 Jul 2020 - This Xtra module is a version of the Cylinder Slice module that sets the resolution, in the Z direction, of the extracted image to the native resolution of the input data.  Learn more

Extract Label
Add-on

Extract Label

Python (pyscro)

11 May 2020 - This module extracts a specified label region by its ID.  Learn more

Scale-Space Laplacian of Gaussian Filter
Add-on

Scale-Space Laplacian of Gaussian Filter

Python (pyscro)

15 Apr 2020 - Image processing filter enhancing spherical or blob like objects of various sizes.  Learn more

Load a Numpy array into PerGeos-Amira-Avizo using the Python API
Add-on

Load a Numpy array into PerGeos-Amira-Avizo using the Python API

Python (pyscro)

21 Oct 2019 - This script simply reads and loads numpy arrays in a user specified directory into PerGeos/Amira-Avizo as an image.  Learn more

Random Forests for Multiclass Segmentation using Python API in PerGeos
Add-on

Random Forests for Multiclass Segmentation using Python API in PerGeos

Python (pyscro), Project (hx, pgo), Data

21 Oct 2019 - Simple demonstration of feature computation where the feature vector contains intensity and 2D eigenvalues (X & Y). This example uses random forests implementation from the sklearn package.  Learn more

PerGeos TCL script for processing all files in a folder with a recipe
Add-on

PerGeos TCL script for processing all files in a folder with a recipe

Tcl

16 Oct 2019 - Process all files in a folder by applying the same recipe to all of them individually.  Learn more

View Manager
Add-on

View Manager

Tcl

14 Oct 2019 - This module allows storing and retrieving camera settings for viewer windows to be able to switch easily between different view presets.  Learn more

Getting Started with Deep Learning Training for Image Segmentation
Add-on

Getting Started with Deep Learning Training for Image Segmentation

Deep learning model, Data

5 Sep 2019 - This is a model and companion project for the Deep Learning tutorial.  Learn more

BSE SEM Denoiser
Add-on

BSE SEM Denoiser

Deep learning model

21 Jun 2019 - U-Net model for denoising back-scattered SEM images.  Learn more