Optical Thin Section Pore Space Characterization in HSV colorspace
Python (pyscro), Project (hx, pgo), Data
10 Jul 2020 - Optical Thin Section Pore Space is segmented converting RGBA images in HSV colorspace by means of Python scripts. Learn more
Segment TEM data without artifact and background effect
Recipe (hxrecipe), Tcl, Project (hx, pgo)
10 Jul 2020 - Segment TEM data aided by the Structure enhancement filter. Learn more
Segmentation of Pathological Osteocytes in an Undecalcified Piece of Mouse Bone using Amira-Avizo2D
Recipe ISP, IVP, A2D
3 Jul 2020 - This is a workflow to segment out osteocytes in mouse bone sample using Amira-Avizo2D. Learn more
Porosity and Permeability by blocks
Tcl
3 Jul 2020 - Splits a binary pore space into blocks and output one porosity and permeability value for every block Learn more
Extracting and Visualizing Local Statistics from Fibrous Materials
Project (hx, pgo)
3 Jul 2020 - This XTRA entry discusses the application of the “Spatial Graph Local Statistics” to extract statistical information from traced fibers in a fibrous material. The sample is 50% glass fiber-reinforced polymer (GFRP), courtesy of EMS Grivory. Learn more
Interactive Top-Hat by Reconstruction
XPand module
3 Jul 2020 - This module provides an interactive Top-Hat segmentation that prevents the segmentation of "false positive" porosity on the edges. Learn more
Tcl, Project (hx, pgo), Data
17 Jun 2020 - To make use of XFiber, the user usually needs to input many parameters. This package provides 2 tools to ease Xfiber process by presetting Cylinder Correlation and Auto Trace Correlation modules values. Learn more
Avizo User's Guide translated to Japanese
Demo, Misc
11 May 2020 - You will find here a selection of Avizo tutorials translated to Japanese. Learn more
Molar Segmentation Using Watershed, Top-Hat, and Surface Generation
Project (hx, pgo), Demo, Data
11 May 2020 - Data, tutorial, and complete project for segmenting a CT-scanned human molar artifact. The tutorial and project cover advanced image segmentation and surface generation. Learn more
Python (pyscro)
11 May 2020 - This module extracts a specified label region by its ID. Learn more
Copy Measure Annotation Settings
Tcl
15 Apr 2020 - This Tcl script-object can be used to copy visualisation settings from one measure to all others in a Measurement module. It is also possible to save/load settings to/from a text file. Learn more
Tcl
15 Apr 2020 - Use this module to fill the text field of a Caption module with the value of a port of another module. Learn more
Scale-Space Laplacian of Gaussian Filter
Python (pyscro)
15 Apr 2020 - Image processing filter enhancing spherical or blob like objects of various sizes. Learn more
Amira User's Guide translated to Japanese
Demo, Misc
29 Jan 2020 - You will find here a large selection of Amira tutorials translated to Japanese. Learn more
Tcl
13 Dec 2019 - This module creates label annotations from the result of a Label Analysis with the help of the Measurement tool. Learn more
Python (pyscro), Project (hx, pgo)
21 Oct 2019 - The purpose of this python script object is to average interleaved data. Learn more
2D SEM (White) Grain Segmentation
Recipe (hxrecipe), Data
21 Oct 2019 - This recipe segments and calculate the physical attributes of the white grains in the 2D SEM image Learn more
Load a Numpy array into PerGeos-Amira-Avizo using the Python API
Python (pyscro)
21 Oct 2019 - This script simply reads and loads numpy arrays in a user specified directory into PerGeos/Amira-Avizo as an image. Learn more
Random Forests for Multiclass Segmentation using Python API in PerGeos
Python (pyscro), Project (hx, pgo), Data
21 Oct 2019 - Simple demonstration of feature computation where the feature vector contains intensity and 2D eigenvalues (X & Y). This example uses random forests implementation from the sklearn package. Learn more
Recipe (hxrecipe), Project (hx, pgo), Demo, Data
21 Oct 2019 - This tutorial demonstrated how to quantify thickness distribution along the length Learn more
Porosity Clustering Analysis and Distance to Surface
Recipe (hxrecipe), Project (hx, pgo), Demo, Data
21 Oct 2019 - This tutorial demonstrates the steps necessary to quantify porosity distribution and perform a pore distance to surface analysis. Learn more