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- Gene Symbol:
-
SCARNA11 - Gene Name:
- small Cajal body-specific RNA 11
- Gene Aliases:
- ACA57
- Chromosome Location:
- Chr.12: 6581473 - 6581609 on Build GRCh38
- Species:
- Human
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: SCARNA11 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NR_003012.1 | 1 | 76 | 96 | ||
| GenBank mRNA | AJ609487.1 | - | 1 | 76 | 96 | |
Adjacent Gene Details
| Gene name | Gene Symbol | Alias | Distance | Relative Direction | Location Chromsome | |
|---|---|---|---|---|---|---|
| Upstream | NOP2 nucleolar protein | NOP2 |
NOL1, NOP120, NSUN1, p120 |
-13.1kb | Sense | Chr. 12 - 6556870 - 6568332 on NCBI Build GRCh38 |
| Downstream | lysophosphatidic acid receptor 5 | LPAR5 |
GPR92, GPR93, KPG_010, LPA5 |
37.2kb | Sense | Chr. 12 - 6618835 - 6636131 on NCBI Build GRCh38 |
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as Clariom D transcript cluster(s) TC1200009743.hg.1This assay targets the same location as HTA transcript cluster(s) TC12001144.hg.1
Set Membership: |
Amplicon length between 86 and 100
3' Most
Detect Genomic DNA
Homo sapiens
Both primers and probe map within a single exon
|
MicroArray Probes:
Agilent
Affymetrix
ArrayStar
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_4038 | - | - |
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_4039 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176538 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176527 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28605462 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28605467 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28605450 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28605457 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28605463 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176560 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28605448 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176530 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176536 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176529 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176550 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176552 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176540 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176556 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28605446 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28605480 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176562 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176544 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176564 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176549 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28605470 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176555 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28605478 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176560 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176544 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28605463 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28605462 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28605446 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176552 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176536 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176527 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176564 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28605470 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28605480 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28605467 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176540 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176556 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176562 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176538 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28605478 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28605450 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176529 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28605448 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176549 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176530 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176550 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28605457 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P08176555 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P08176562 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P08176533 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P08176527 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P08176568 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P08176535 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P08176564 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P08176555 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P08176540 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P08176542 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P08176560 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P08176566 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P08176544 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P08176557 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P08176529 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P08176531 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P08176549 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P08176538 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P08176547 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P08176553 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Human Gene 1.0 ST Array | NR_003012_at | - | - |
| Affymetrix Human Gene 1.0 ST Array | 7960636 | - | - |
| Affymetrix Human Gene 1.1 ST Array | 7960635 | - | - |
| Affymetrix Human Transcriptome Array 2.0 | PSR12015077.hg.1 | ENST00000516089.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR12015077.hg.1 | NR_003012.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR12015077.hg.1 | TC12001144.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | TC1200009743.hg.1 | ENST00000516089.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1200009743.hg.1 | NR_003012.1 | Refseq |
| Affymetrix Human Clariom D Assay | TC1200009743.hg.1 | ENST00000516089.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1200009743.hg.1 | NR_003012.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1200172929.hg.1 | ENST00000516089.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1200172929.hg.1 | NR_003012.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1200172929.hg.1 | ENST00000516089.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1200172929.hg.1 | NR_003012.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1200172929.hg.1 | TC1200009743.hg.1 | Clariom D TC |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A047236 | - | - |
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A047236 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| HumanHT-12 v4 Expression BeadChip | ILMN_3236010 | NR_003012.1 | human_transcriptome |
| HumanHT-12 v4 Expression BeadChip | ILMN_3236010 | AJ609487.1 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_3236010 | NR_003012.1 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_3236010 | AJ609487.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_3236010 | NR_003012.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_3236010 | AJ609487.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_3236010 | NR_003012.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_3236010 | AJ609487.1 | human_transcriptome |
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