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          • Home
          • › Search Tool
          • › Search Results
          • › Rn00689608_m1
          See other PAX6 GE Assays ›
          Gene Symbol:
          Pax6
          Gene Name:
          paired box 6
          Gene Aliases:
          -
          Chromosome Location:
          Chr.3: 95699478 - 95728556 on Build Rnor_6.0
          Species:
          Rat
          Species Specific ID (Flybase ID):
          -
          Assay ID Rn00689608_m1
          Best Coverage
          Size
          Availability Inventoried
          Catalog # 4331182
          Price 284.00
          Your Price
          Online offer: 266.65
          266.65
          Check your price ›
          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Pax6
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_013001.2 NP_037133.1 11 - 12 1347 60
          XM_006234633.2 XP_006234695.1 13 - 14 1772 60
          XM_006234634.2 XP_006234696.1 13 - 14 3228 60
          XM_006234635.2 XP_006234697.1 13 - 14 1687 60
          XM_006234636.2 XP_006234698.1 13 - 14 2678 60
          XM_008762060.1 XP_008760282.1 12 - 13 1871 60
          GenBank mRNA AJ627631.1 - 9 - 10 1229 60
          AY540905.1 - 10 - 11 1244 60
          AY540906.1 - 10 - 11 1244 60
          BC128741.1 - 11 - 12 1347 8363963 60
          HQ121510.1 - 9 - 10 1230 60
          U69644.1 - 11 - 12 1567 60

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          More Information


          Updated Mapping Information

          This assay targets the same location as RTA transcript cluster(s) TC0300001327.rn.1

          Set Membership:

          Ambion siRNA available Amplicon length less than or equal to 70 3' Most Mammalian Gene Collection Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

          Matching Ambion siRNAs:

          Click here to find siRNAs for Gene Pax6

          Gene Ontology Categories:

          Function(s) Process(es)

          negative regulation of transcription from RNA polymerase II promoter
          establishment of mitotic spindle orientation
          blood vessel development
          cell fate determination
          neural crest cell migration
          neuron migration
          negative regulation of protein phosphorylation
          positive regulation of neuroblast proliferation
          epithelial cell development
          lens development in camera-type eye
          type B pancreatic cell differentiation
          pancreatic A cell differentiation
          pancreatic A cell development
          regulation of transcription from RNA polymerase II promoter
          transcription from RNA polymerase II promoter
          smoothened signaling pathway
          axonogenesis
          axon guidance
          central nervous system development
          brain development
          salivary gland morphogenesis
          negative regulation of cell proliferation
          response to wounding
          regulation of asymmetric cell division
          dorsal/ventral axis specification
          anterior/posterior pattern specification
          dorsal/ventral pattern formation
          regulation of gene expression
          positive regulation of gene expression
          regulation of neuron projection development
          protein ubiquitination
          spinal cord development
          pallium development
          cerebellum development
          rhombomere morphogenesis
          olfactory bulb development
          oligodendrocyte cell fate specification
          cerebral cortex regionalization
          forebrain anterior/posterior pattern specification
          forebrain dorsal/ventral pattern formation
          commitment of neuronal cell to specific neuron type in forebrain
          forebrain-midbrain boundary formation
          regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification
          regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification
          regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment
          telencephalon regionalization
          pituitary gland development
          interkinetic nuclear migration
          signal transduction involved in regulation of gene expression
          cell differentiation
          keratinocyte differentiation
          regulation of cell migration
          positive regulation of epithelial cell differentiation
          forebrain development
          hindbrain development
          lacrimal gland development
          cellular response to insulin stimulus
          protein localization to organelle
          cellular response to drug
          eye photoreceptor cell development
          glucose homeostasis
          positive regulation of cell fate specification
          camera-type eye development
          cellular response to fibroblast growth factor stimulus
          cell fate commitment
          response to ethanol
          regulation of neuron differentiation
          negative regulation of neuron differentiation
          positive regulation of transcription, DNA-templated
          positive regulation of transcription from RNA polymerase II promoter
          regulation of timing of cell differentiation
          embryonic camera-type eye morphogenesis
          astrocyte differentiation
          negative regulation of epithelial cell proliferation
          regulation of neurogenesis
          negative regulation of neurogenesis
          retina development in camera-type eye
          iris morphogenesis
          cornea development in camera-type eye
          neural precursor cell proliferation
          positive regulation of glucagon secretion
          cellular response to glucose stimulus
          cellular response to prostaglandin E stimulus
          insulin metabolic process
          negative regulation of neural precursor cell proliferation
          positive regulation of neuron migration
          RNA polymerase II core promoter proximal region sequence-specific DNA binding
          RNA polymerase II core promoter sequence-specific DNA binding
          RNA polymerase II transcription factor activity, sequence-specific DNA binding
          transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
          transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
          transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
          DNA binding
          AT DNA binding
          chromatin binding
          double-stranded DNA binding
          transcription factor activity, sequence-specific DNA binding
          ubiquitin-protein transferase activity
          transcription factor binding
          protein kinase binding
          ubiquitin protein ligase binding
          histone acetyltransferase binding
          sequence-specific DNA binding
          transcription regulatory region DNA binding
          co-SMAD binding
          R-SMAD binding
          HMG box domain binding

          MicroArray Probes:

          Agilent Affymetrix ABI Illumina

          Array Name Probe IDs Targets Target Type
          Agilent Whole Rat Genome Microarray 4x44K v2 A_64_P042107 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 489924 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 816340 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 354586 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 230460 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 563426 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 539167 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 3888 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 850313 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 902282 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 270953 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 947870 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 912042 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 253059 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 483735 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 332673 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 411615 - -
          Agilent SurePrint G3 Rat CGH Microarray 4x180K 130831 - -
          Agilent SurePrint G3 Rat CGH Microarray 4x180K 89226 - -
          Agilent SurePrint G3 Rat CGH Microarray 4x180K 104515 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P042107 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P042107 - -
          Agilent SurePrint G3 Rat GE 8x60K Microarray A_64_P042107 - -
          SurePrint G3 Rat Gene Expression Microarray G4131A A_43_P11650 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 32311 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 71190 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 84167 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 94167 - -
          Array Name Probe IDs Targets Target Type
          Affymetrix Rat Gene 1.0 ST Array 10838274 - -
          Affymetrix Rat Gene 1.0 ST Array 10838275 - -
          Affymetrix Rat Gene 1.0 ST Array 10838268 - -
          Affymetrix Rat Gene 1.0 ST Array 10838266 - -
          Affymetrix Rat Gene 1.0 ST Array 10838263 - -
          Affymetrix Rat Gene 1.0 ST Array 10838269 - -
          Affymetrix Rat Gene 1.0 ST Array 10838267 - -
          Affymetrix Rat Gene 1.0 ST Array 10838270 - -
          Affymetrix Rat Gene 1.0 ST Array 10838272 - -
          Affymetrix Rat Gene 1.0 ST Array 10838262 - -
          Affymetrix Rat Gene 1.0 ST Array 10838261 - -
          Affymetrix Rat Gene 1.0 ST Array 10838271 - -
          Affymetrix Rat Gene 1.0 ST Array 10838273 - -
          Affymetrix Rat Gene 1.0 ST Array 10838260 - -
          Affymetrix Rat Gene 1.0 ST Array 10838265 - -
          Affymetrix Rat Gene 1.1 ST Array 10838259 - -
          Rat Genome 230 2.0 Array 1369242_PM_at - -
          Rat Genome 230 2.0 Array 1369242_at - -
          Affymetrix HT Rat Focus Array 1369242_at - -
          Affymetrix HT Rat Focus Array 1369242_PM_at - -
          Affymetrix Rat Clariom S Assay PSR0300009029.rn.1 TC0300001327.rn.1 RTA TC
          Rat Expression Set 230 1369242_at - -
          Rat Expression Set 230 1369242_PM_at - -
          Affymetrix Rat Gene 1.0 ST Array 10838259 - -
          Rat Genome U34 Set S74393_s_at - -
          Array Name Probe IDs Targets Target Type
          ABI Rat Genome Survey Microarray 21989402 - -
          Array Name Probe IDs Targets Target Type
          Illumina ratRef-12 v1.0 expression beadchip ILMN_1362288 - -
          RatRef-12 Expression BeadChip ILMN_55592 - -

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