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- Gene Symbol:
-
Kdm5b - Gene Name:
- lysine (K)-specific demethylase 5B
- Gene Aliases:
- Jarid1b, RGD1565602
- Chromosome Location:
- Chr.13: 51384366 - 51455392 on Build Rnor_6.0
- Species:
- Rat
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Kdm5b | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_001107177.1 | NP_001100647.1 | 25 - 26 | 4336 | 62 | |
| XM_008769555.1 | XP_008767777.1 | 25 - 26 | 4348 | 62 | ||
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC1300000317.rn.1Set Membership: |
Amplicon length less than or equal to 70
Recommended Assay
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Panther Classification:
Gene Ontology Categories:
Function(s)
Process(es)
histone H3-K4 demethylation
histone H3-K4 demethylation, trimethyl-H3-K4-specific
cellular response to fibroblast growth factor stimulus
negative regulation of transcription, DNA-templated
oxidation-reduction process
response to fungicide
lens fiber cell differentiation
molecular_function
DNA binding
transcription corepressor activity
zinc ion binding
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
histone demethylase activity (H3-K4 specific)
histone demethylase activity (H3-trimethyl-K4 specific)
histone demethylase activity (H3-dimethyl-K4 specific)
histone H3-K4 demethylation
histone H3-K4 demethylation, trimethyl-H3-K4-specific
cellular response to fibroblast growth factor stimulus
negative regulation of transcription, DNA-templated
oxidation-reduction process
response to fungicide
lens fiber cell differentiation
molecular_function
DNA binding
transcription corepressor activity
zinc ion binding
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
histone demethylase activity (H3-K4 specific)
histone demethylase activity (H3-trimethyl-K4 specific)
histone demethylase activity (H3-dimethyl-K4 specific)
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_44_P342245 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 904106 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 310872 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 430851 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 439399 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 109010 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 638540 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 675092 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 367986 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 616159 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 61253 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 627610 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 68697 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 520911 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 63749 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 38433 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 483674 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 259438 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 588326 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 281908 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 317685 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 707381 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 636563 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 2119 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 894463 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 906696 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 643042 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 395553 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 865498 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 900985 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 788405 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 635370 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 163189 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 922824 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 914026 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 441101 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 16099 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 662508 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 555694 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 467264 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 803905 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 886315 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 538845 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 356503 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 582876 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 911577 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 444701 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 483070 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 334864 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 74520 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 143369 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 59986 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 86612 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 85625 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 147344 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 110181 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 32549 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 130311 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 110573 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P342245 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P342245 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_44_P342245 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P175461 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P143247 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P342245 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 98012 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10764154 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764173 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764160 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764163 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764167 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764148 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764169 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764152 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764145 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764150 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764156 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764172 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764159 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764146 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764151 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764162 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764170 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764171 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764164 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764157 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764149 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764166 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764165 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764168 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764147 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764155 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764161 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764158 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764153 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10764144 | - | - |
| Rat Genome 230 2.0 Array | 1376347_at | - | - |
| Rat Genome 230 2.0 Array | 1377863_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1382152_at | - | - |
| Rat Genome 230 2.0 Array | 1382152_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1383082_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1377134_at | - | - |
| Rat Genome 230 2.0 Array | 1377134_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1383082_at | - | - |
| Rat Genome 230 2.0 Array | 1377863_at | - | - |
| Rat Genome 230 2.0 Array | 1376347_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1376347_at | - | - |
| Affymetrix HT Rat Focus Array | 1376347_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1382152_at | - | - |
| Affymetrix HT Rat Focus Array | 1377863_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1377134_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1377134_at | - | - |
| Affymetrix HT Rat Focus Array | 1383082_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1383082_at | - | - |
| Affymetrix HT Rat Focus Array | 1382152_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1377863_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR1300002104.rn.1 | TC1300000317.rn.1 | RTA TC |
| Rat Expression Set 230 | 1377134_PM_at | - | - |
| Rat Expression Set 230 | 1376347_at | - | - |
| Rat Expression Set 230 | 1377134_at | - | - |
| Rat Expression Set 230 | 1376347_PM_at | - | - |
| Rat Expression Set 230 | 1383082_at | - | - |
| Rat Expression Set 230 | 1382152_at | - | - |
| Rat Expression Set 230 | 1382152_PM_at | - | - |
| Rat Expression Set 230 | 1377863_at | - | - |
| Rat Expression Set 230 | 1377863_PM_at | - | - |
| Rat Expression Set 230 | 1383082_PM_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10764144 | - | - |
| Rat Genome U34 Set | rc_AI045499_at | - | - |
| Rat Genome U34 Set | rc_AI044987_at | - | - |
| Rat Genome U34 Set | rc_AI072813_at | - | - |
| Rat Genome U34 Set | rc_AI234336_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 22139776 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_2040496 | - | - |
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