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- Gene Symbol:
-
Atg5 - Gene Name:
- autophagy related 5
- Gene Aliases:
- -
- Chromosome Location:
- Chr.20: 49301783 - 49393147 on Build Rnor_6.0
- Species:
- Rat
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Atg5 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_001014250.1 | NP_001014272.1 | 6 - 7 | 919 | 98 | |
| GenBank mRNA | AM087012.1 | - | 6 - 7 | 923 | 98 | |
| BC083602.1 | - | 6 - 7 | 919 | 7133143 | 98 | |
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC2000000873.rn.1Set Membership: |
Ambion siRNA available
Amplicon length between 86 and 100
Apoptosis
3' Most
Mammalian Gene Collection
Recommended Assay
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Matching Ambion siRNAs:
Panther Classification:
Gene Ontology Categories:
Function(s)
Process(es)
autophagosome assembly
mitophagy
blood vessel remodeling
regulation of cytokine secretion involved in immune response
C-terminal protein lipidation
autophagy
apoptotic process
cellular response to nitrogen starvation
response to fungus
negative regulation of protein ubiquitination
negative stranded viral RNA replication
vasodilation
response to drug
negative regulation of apoptotic process
post-translational protein modification
nucleophagy
innate immune response
otolith development
regulation of release of sequestered calcium ion into cytosol
ventricular cardiac muscle cell development
heart contraction
positive regulation of mucus secretion
regulation of cilium assembly
regulation of reactive oxygen species metabolic process
negative regulation of histone H4-K16 acetylation
protein binding
Atg8 ligase activity
autophagosome assembly
mitophagy
blood vessel remodeling
regulation of cytokine secretion involved in immune response
C-terminal protein lipidation
autophagy
apoptotic process
cellular response to nitrogen starvation
response to fungus
negative regulation of protein ubiquitination
negative stranded viral RNA replication
vasodilation
response to drug
negative regulation of apoptotic process
post-translational protein modification
nucleophagy
innate immune response
otolith development
regulation of release of sequestered calcium ion into cytosol
ventricular cardiac muscle cell development
heart contraction
positive regulation of mucus secretion
regulation of cilium assembly
regulation of reactive oxygen species metabolic process
negative regulation of histone H4-K16 acetylation
protein binding
Atg8 ligase activity
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P118737 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_44_P761066 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 70396 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 387438 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 966342 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 85786 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 570022 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 778499 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 195379 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 411714 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 291517 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 244621 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 554425 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 238186 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 88613 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 961966 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 635066 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 830255 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 111391 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 656557 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 804817 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 6770 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 788686 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 274232 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 22625 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 487420 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 62208 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 222491 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 939440 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 667128 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 759885 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 228025 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 654317 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 44033 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 72433 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 551832 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 427009 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 709088 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 23253 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 829402 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 425260 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 639932 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 282920 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 914751 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 139982 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 68266 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 428391 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 794989 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 313421 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 65906 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 407225 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 751949 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 34463 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 674761 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 165663 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 753274 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 892709 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 723078 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 611870 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 698689 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 12825 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 271150 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 604367 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 528963 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 938645 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 202320 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 822161 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 145824 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 47325 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 64595 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 66012 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 45487 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 7770 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 70948 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 77638 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 10766 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 89976 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 7099 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 106604 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 167256 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P118737 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P761066 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P761066 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P118737 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P118737 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_44_P761066 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P761066 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 6537 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 28479 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 10293 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 82779 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 15574 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 60852 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 86163 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10830650 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10830648 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10830653 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10830649 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10830652 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10830647 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10830651 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10830646 | - | - |
| Rat Genome 230 2.0 Array | 1385526_at | - | - |
| Rat Genome 230 2.0 Array | 1373526_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1396878_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1396878_at | - | - |
| Rat Genome 230 2.0 Array | 1373526_at | - | - |
| Rat Genome 230 2.0 Array | 1385526_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1385526_at | - | - |
| Affymetrix HT Rat Focus Array | 1373526_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1396878_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1385526_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1373526_at | - | - |
| Affymetrix HT Rat Focus Array | 1396878_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR2000007314.rn.1 | TC2000000873.rn.1 | RTA TC |
| Rat Expression Set 230 | 1373526_at | - | - |
| Rat Expression Set 230 | 1373526_PM_at | - | - |
| Rat Expression Set 230 | 1396878_at | - | - |
| Rat Expression Set 230 | 1385526_PM_at | - | - |
| Rat Expression Set 230 | 1385526_at | - | - |
| Rat Expression Set 230 | 1396878_PM_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10830646 | - | - |
| Rat Genome U34 Set | rc_AI105153_at | - | - |
| Rat Genome U34 Set | rc_AI178683_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 20791408 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1650937 | - | - |
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